Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,344,285 – 10,344,405 |
Length | 120 |
Max. P | 0.622982 |
Location | 10,344,285 – 10,344,405 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -31.05 |
Consensus MFE | -27.24 |
Energy contribution | -26.92 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.06 |
Mean z-score | -1.66 |
Structure conservation index | 0.88 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10344285 120 - 22407834 CCAAAUAAGGACAACUGCCUCGCGAACAUGUGUUUGUUCAGAUGUGACUGUUGGUAUAUCGUAGCCCAUGGGUGCCAUAUACUGGAAAAGUCUGCAUAAAUUAAAUAUAAACGUGAAAAG ((......)).........(((((....((((((((.....((((((((.(..((((((.(((.((....))))).))))))..)...)))).))))....))))))))..))))).... ( -31.00) >DroSec_CAF1 932 120 - 1 CCAAAUAAGGACAACUGCCUCGCGAACAUAUGUUUGUUCAGAUGUGACUGUUGGUAUAUCGUAGCCCAUGGGUGCCAUAUACUGGAAAAGUCUGCAUAAAUUAAAUAUAAACGUGCAAAG .......(((.(....)))).(((....((((((((.....((((((((.(..((((((.(((.((....))))).))))))..)...)))).))))....))))))))....))).... ( -30.40) >DroSim_CAF1 891 120 - 1 CCAAAUAAGGACAACUGCCUCGCGAACAUGUGUUUGUUCAGAUGUGACUGUUGGUAUAUCGUAGCCCAUGGGUGCCAUAUACUGGAAAAGUCUGCAUAAAUUAAAUAUAAACGUGCAAAG .......(((.(....)))).(((....((((((((.....((((((((.(..((((((.(((.((....))))).))))))..)...)))).))))....))))))))....))).... ( -30.40) >DroYak_CAF1 889 119 - 1 CCAAAUAAGGACAACUGCCU-GCGAACAUGUGUUUGUUCAGAUGUGACUGUUGGUAUAUUAUUGCCCAUGGGUGUCGUAUACUGGAAAAGUCUGCAUAAAUUAAAUAUAAAGGUGGAUAG ((......))....(..(((-..(((((......)))))..((((((((.(..((((((...((((....))))..))))))..)...)))).)))).............)))..).... ( -32.40) >consensus CCAAAUAAGGACAACUGCCUCGCGAACAUGUGUUUGUUCAGAUGUGACUGUUGGUAUAUCGUAGCCCAUGGGUGCCAUAUACUGGAAAAGUCUGCAUAAAUUAAAUAUAAACGUGCAAAG .......(((.(....))))((((((((......)))))..((((((((.(..((((((.((.(((....))))).))))))..)...)))).))))...............)))..... (-27.24 = -26.92 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:18 2006