Locus 355

Sequence ID 2L_DroMel_CAF1
Location 1,109,597 – 1,109,712
Length 115
Max. P 0.908353
window562

overview

Window 2

Location 1,109,597 – 1,109,712
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.86
Mean single sequence MFE -49.85
Consensus MFE -29.83
Energy contribution -31.80
Covariance contribution 1.97
Combinations/Pair 1.21
Mean z-score -2.73
Structure conservation index 0.60
SVM decision value 1.06
SVM RNA-class probability 0.908353
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1109597 115 - 22407834
CCUCGUCCAUGGCCGGGUCAAUCUCCUCGAAGUCCGGCGUCAGGUUCUCGGAGUGAAAGAGCUCCGAGAAGAGUCGGUGCCUUUGAACCUCCAUGGCGGACUUCAGCCCGGUC-----AC
.........(((((((((..........((((((((.(((.(((((((((((((......)))))))((((.((....))))))))))))..))).)))))))).))))))))-----). ( -51.10)
>DroPse_CAF1 38905 120 - 1
CCUCAUCAAAGAUAGUGUCAAUCAUAGCAAAUUCAACCUCCAGGCCUUCGGAGAGGGCGAGCUGCGAGAAAAGCUUGUGCAUCUCCACCUCCAUGGUGGACUUCAGGCCGGUGGUUUUGU
..........((...(((........)))...))((((.((.(((((..((((.(.(((((((........))))))).)...((((((.....))))))))))))))))).)))).... ( -42.40)
>DroSec_CAF1 28143 115 - 1
CCUCGUCCAGGGCCGGGUCGAUCUCCUCGAAGUCCGGCGUCAUGUUCUCGGAGUAGAAGAGCUCCGAGAAGAGUCGGUGCCUUUGGACCUCCAUGGCGGACUUCAGCCCGGUC-----AC
..........((((((((.((.....))(((((((..((.(.(.((((((((((......)))))))))).)).))..(((..(((....))).)))))))))).))))))))-----.. ( -54.80)
>DroSim_CAF1 27981 115 - 1
CCUCGUCCAGGGCCGGGUCGAUCUCCUCGAAGUCCGGCGUCAUGUUCUCGGAGUAGAAGAGCUCCGAGAAGAGUCGGUGCCUUUGGACCUCCAUGGCGGACUUCAGCCCGGUC-----AC
..........((((((((.((.....))(((((((..((.(.(.((((((((((......)))))))))).)).))..(((..(((....))).)))))))))).))))))))-----.. ( -54.80)
>DroEre_CAF1 30934 115 - 1
CCUCAUCCAUUACCGGGUCGAUCUCCCCGAAGUCCGGCGCCAUGGACUCGGGGUAAAAGAGCUCUGUGAAGAGCCGAUGCAUCUGAACCUCCAUGGCGGACUUCAGUCCGGUC-----AC
...........((((((..((..((((((.....))).((((((((.((((((((...(.(((((....))))))..))).)))))...)))))))))))..))..)))))).-----.. ( -46.20)
>DroYak_CAF1 29211 115 - 1
CCUCGUCCAUGACCGGGUCGAUCUCCUCGAAGUCCGGCGUCAUGGUCUCGGAGUAAAAGAGCUCCGAGAACAGUCGGUGCAUCUGAACCUCCAUGGCCGACUUCAGUCCGGUC-----AC
.........((((((((.(((.....))((((((.(((..((((((((((((((......)))))))))......(((........))).)))))))))))))).))))))))-----). ( -49.80)
>consensus
CCUCGUCCAUGACCGGGUCGAUCUCCUCGAAGUCCGGCGUCAUGUUCUCGGAGUAAAAGAGCUCCGAGAAGAGUCGGUGCAUCUGAACCUCCAUGGCGGACUUCAGCCCGGUC_____AC
..........((((((((..........(((((((...((((((.(((((((((......)))))))))......(((........)))..))))))))))))).))))))))....... (-29.83 = -31.80 +   1.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:48 2006