Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,341,977 – 10,342,088 |
Length | 111 |
Max. P | 0.825806 |
Location | 10,341,977 – 10,342,088 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 79.95 |
Mean single sequence MFE | -24.32 |
Consensus MFE | -13.24 |
Energy contribution | -14.92 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.18 |
Mean z-score | -2.15 |
Structure conservation index | 0.54 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10341977 111 + 22407834 GUUUCGUCAGUUACUGGUUUCAUAUAUUAGUGUACAUAUAUACACGUCUGCACCACCUUCAUUUGUUUAGUCAUAGUCUCAAGCUAAACAAAUGAACCAGGUGUGCACCUA ...............(((...........(((((......)))))....((((.(((((((((((((((((...........)))))))))))))...))))))))))).. ( -30.50) >DroSec_CAF1 3579 111 + 1 GUUUCGUCAGUUACUGGUUUCAUAUAUUUGUGCACAUAUACACACGUCUGCUCCACCUACAUUUGUUUUGUCAUAGUCUCAAGCAAAACAAAUGAACCAGGUGUGCACCCA ......((((...))))...........((((........)))).(..(((..(((((.((((((((((((...........))))))))))))....))))).)))..). ( -23.50) >DroSim_CAF1 1860 111 + 1 GUUUCGUCAGUUACUGGUUUCAUAUAUUUGUGCACAUAUAUACACGUCUGCUCCACCUACAUUUGUUUAGUCAUAGUCUCAAGCAAAACAAAUGAACCAGGUGUGCACCCA ......((((...)))).....(((((.((....)).)))))...(..(((..(((((.(((((((((.((...........)).)))))))))....))))).)))..). ( -19.30) >DroEre_CAF1 3665 88 + 1 ------------AAUGG-UUAAUAUAUAUGUGUACAUAUAUACACGACUACACCUCUUUCGUUUGUUUAGUCAUAGUCUU----------AAUUAACCAGGUGUGCCCGUA ------------..(((-((((((((((((....)))))))....(((((.((...........)).)))))........----------.))))))))((....)).... ( -18.60) >DroYak_CAF1 2469 108 + 1 ---UCGUCAGUUACUGUUUUCAUGUAUAUGUACACAUAUAUACACGACUGCACCUCCUACGUUUGUUUAGUCAUAGUCUUUGGCUACACAAAUGAACCAGGUGUGCCCUUA ---..(((......((....))(((((((((....))))))))).))).((((((....(((((((.((((((.......)))))).)))))))....))))))....... ( -29.70) >consensus GUUUCGUCAGUUACUGGUUUCAUAUAUUUGUGCACAUAUAUACACGUCUGCACCACCUACAUUUGUUUAGUCAUAGUCUCAAGCAAAACAAAUGAACCAGGUGUGCACCUA .............................((((((((........((.......))...((((((((((((...........))))))))))))......))))))))... (-13.24 = -14.92 + 1.68)
Location | 10,341,977 – 10,342,088 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 79.95 |
Mean single sequence MFE | -27.44 |
Consensus MFE | -14.10 |
Energy contribution | -15.86 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.26 |
Mean z-score | -2.18 |
Structure conservation index | 0.51 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.803191 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10341977 111 - 22407834 UAGGUGCACACCUGGUUCAUUUGUUUAGCUUGAGACUAUGACUAAACAAAUGAAGGUGGUGCAGACGUGUAUAUAUGUACACUAAUAUAUGAAACCAGUAACUGACGAAAC ..(((((((((((...(((((((((((((..........).)))))))))))))))).))))....((((((....))))))...........)))............... ( -32.00) >DroSec_CAF1 3579 111 - 1 UGGGUGCACACCUGGUUCAUUUGUUUUGCUUGAGACUAUGACAAAACAAAUGUAGGUGGAGCAGACGUGUGUAUAUGUGCACAAAUAUAUGAAACCAGUAACUGACGAAAC (((.(((.((((((...((((((((((((..........).)))))))))))))))))..)))....((((((....))))))...........))).............. ( -29.70) >DroSim_CAF1 1860 111 - 1 UGGGUGCACACCUGGUUCAUUUGUUUUGCUUGAGACUAUGACUAAACAAAUGUAGGUGGAGCAGACGUGUAUAUAUGUGCACAAAUAUAUGAAACCAGUAACUGACGAAAC (((.(((.((((((...(((((((((..(..........)...)))))))))))))))..)))...((((((....))))))............))).............. ( -26.60) >DroEre_CAF1 3665 88 - 1 UACGGGCACACCUGGUUAAUU----------AAGACUAUGACUAAACAAACGAAAGAGGUGUAGUCGUGUAUAUAUGUACACAUAUAUAUUAA-CCAUU------------ ...((.....))(((((((..----------.....((((((((.((...(....)..)).))))))))((((((((....))))))))))))-)))..------------ ( -25.10) >DroYak_CAF1 2469 108 - 1 UAAGGGCACACCUGGUUCAUUUGUGUAGCCAAAGACUAUGACUAAACAAACGUAGGAGGUGCAGUCGUGUAUAUAUGUGUACAUAUACAUGAAAACAGUAACUGACGA--- .....((((..((((((((....)).)))))....(((((..........))))))..))))..((((((((((........))))))))))...(((...)))....--- ( -23.80) >consensus UAGGUGCACACCUGGUUCAUUUGUUUAGCUUGAGACUAUGACUAAACAAAUGUAGGUGGUGCAGACGUGUAUAUAUGUGCACAAAUAUAUGAAACCAGUAACUGACGAAAC .....((((..((....(((((((((((.............)))))))))))..))..))))....((((((....))))))............................. (-14.10 = -15.86 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:07 2006