Locus 3545

Sequence ID 2L_DroMel_CAF1
Location 10,338,894 – 10,338,989
Length 95
Max. P 0.558419
window5597

overview

Window 7

Location 10,338,894 – 10,338,989
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -18.00
Consensus MFE -18.00
Energy contribution -18.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 1.00
SVM decision value 0.05
SVM RNA-class probability 0.558419
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10338894 95 - 22407834
UUUGCAUUGCGUGAUUAUUGCUUUUUGCAUAGUUUUACUAUUAAAAUGUUUUGUGGAGAUUAUUAUAUUAUCACAUGAUUUUCGUAUAGGCAAGA
(((((..((((.(((((..((.(((((.((((.....))))))))).))..(((((.(((......))).))))))))))..))))...))))). ( -18.00)
>DroSim_CAF1 4744 95 - 1
UUUGCAUUGCGUGAUUAUUGCUUUUUGCAUAGUUUUACUAUUAAAAUGUUUUGUGGAGAUUAUUAUAUUAUCACAUGAUUUUCGUAUAGGCAAGA
(((((..((((.(((((..((.(((((.((((.....))))))))).))..(((((.(((......))).))))))))))..))))...))))). ( -18.00)
>DroYak_CAF1 4746 95 - 1
UUUGCAUUGCGUGAUUAUUGCUUUUUGCAUAGUUUUACUAUUAAAAUGUUUUGUGGAGAUUAUUAUAUUAUCACAUGAUUUUCGUAUAGGCAAGA
(((((..((((.(((((..((.(((((.((((.....))))))))).))..(((((.(((......))).))))))))))..))))...))))). ( -18.00)
>consensus
UUUGCAUUGCGUGAUUAUUGCUUUUUGCAUAGUUUUACUAUUAAAAUGUUUUGUGGAGAUUAUUAUAUUAUCACAUGAUUUUCGUAUAGGCAAGA
(((((..((((.(((((..((.(((((.((((.....))))))))).))..(((((.(((......))).))))))))))..))))...))))). (-18.00 = -18.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:05 2006