Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,336,806 – 10,336,902 |
Length | 96 |
Max. P | 0.500000 |
Location | 10,336,806 – 10,336,902 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 77.67 |
Mean single sequence MFE | -26.75 |
Consensus MFE | -18.03 |
Energy contribution | -18.37 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.22 |
Mean z-score | -1.07 |
Structure conservation index | 0.67 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10336806 96 + 22407834 UCCGGAUAGCUUAAGCUCGGAUCACGCCACAGAUGCGGCAACUACUCAACUCUGGCAGGCACUGGCCAGAUCAGCCGGUACG-------UAUUAUUAU---CCGAC------ ..((((((((....))((((.....(((.(....).)))...........((((((........))))))....))))....-------......)))---)))..------ ( -27.40) >DroSec_CAF1 2688 96 + 1 UCCGGAUAGCUUAAGCUCGGAUCACGCCACAGAUGCGGCAACUACUCAACUCUGGCAAGCACUGGCCAGAUCAGCCGGUACG-------UAUUAUUAC---CCGUU------ ((((...(((....)))))))....(((.(....).)))...........((((((........))))))..(((.((((..-------......)))---).)))------ ( -24.60) >DroSim_CAF1 2690 96 + 1 UCCGGAUAGCUUAAGCUCGGAUCACGCCACAGAUGCGGCAACUACUCAACUCUGGCAGGCACUGGCCAGAUCUGCCGGUAAG-------UAUUAUAAU---UAGUA------ .((((..(((....)))((((((..((((.((.((.(.......).)).)).)))).(((....))).))))))))))....-------.........---.....------ ( -28.10) >DroEre_CAF1 2407 93 + 1 UCCGGAUAGCCUAAGCUCGGAUCACGCCACAGAUGCGGCAACUACUCAACUGUGGCAGGCACUGGCUAGAUCAGCCGGUACG-------UAUUAUCUU---UC--------- ...(((((((((......(.....)(((((((.((.(.......).)).)))))))))))(((((((.....)))))))...-------...))))).---..--------- ( -32.50) >DroMoj_CAF1 855 103 + 1 UCCUGAAAGUGUAAAUUCGGAUCAUGCCACAGAUGCUGCUACAACUCAACUCUGGCAAGCAUUAGCUCGUUCUGCAGGUAAG-------UUCAAAUAAUUAUA--AUUGCAA ...((....((((((((.((((..((((...((((((((((...........)))).)))))).((.......)).)))).)-------))).)))..)))))--....)). ( -18.40) >DroAna_CAF1 2366 103 + 1 CCCGGAUAGCCUGAGCUCGGACCAUGCCACAGAUGCAGCUACAACUCAACUUUGGCAAGCAUUGGCCCGAUCAGCAGGUAAGCCUACAUUAUUAUUAA---AUGUA------ ...((...(((((...((((.((((((((.((.((.((......)))).)).))))).....))).))))....)))))...))((((((.......)---)))))------ ( -29.50) >consensus UCCGGAUAGCUUAAGCUCGGAUCACGCCACAGAUGCGGCAACUACUCAACUCUGGCAAGCACUGGCCAGAUCAGCCGGUAAG_______UAUUAUUAU___UCGUA______ .((((..(((....)))..((((..((((.((.((.(.......).)).)).)))).(((....))).))))..)))).................................. (-18.03 = -18.37 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:04 2006