Locus 3543

Sequence ID 2L_DroMel_CAF1
Location 10,336,613 – 10,336,717
Length 104
Max. P 0.642568
window5595

overview

Window 5

Location 10,336,613 – 10,336,717
Length 104
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -21.17
Consensus MFE -19.94
Energy contribution -20.00
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -0.91
Structure conservation index 0.94
SVM decision value 0.23
SVM RNA-class probability 0.642568
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10336613 104 + 22407834
UUGAUAUUCAGUCACACUUAAGAAGUGAAGAGGAUUUUCAAAACUACAGUAUUACCAUUAACCAAGUUGGUGGGUCCGACUUCAAAUCAAAAGCACCCAAGGCG
(((((....((((.((((.....))))....((((.......((....))....((((((((...))))))))))))))))....)))))..((.......)). ( -21.40)
>DroSec_CAF1 2495 104 + 1
UUGAUAUUCAGUCACACUUAAGAAGUGAAGAGGAUUUUCAAAACUACAGUAUUACCAUUAACCAAGUUGGUGGGUCCGACUUCAAAUCAAAAGCACCCAAGGCG
(((((....((((.((((.....))))....((((.......((....))....((((((((...))))))))))))))))....)))))..((.......)). ( -21.40)
>DroSim_CAF1 2497 104 + 1
UUGAUAUUCAGUCACACUUAAGAAGUGAAGAGGAUUUUCAAAACUACAGUAUUACCAUUAACCAAGUUGGUGGGUCCGACUUCAAAUCAAAAGCACCCAAGGCG
(((((....((((.((((.....))))....((((.......((....))....((((((((...))))))))))))))))....)))))..((.......)). ( -21.40)
>DroEre_CAF1 2214 104 + 1
UUGAUAUUCAGUCACACUUAAGAAGUGAAAAGGAUUUUCAAAACUACAGUAUUACCAUUAACCAAGUUGGUGGGUCCGACUUCAAAUCAAAAGCACCCAAGGCG
(((((....((((.((((.....))))....((((.......((....))....((((((((...))))))))))))))))....)))))..((.......)). ( -21.40)
>DroYak_CAF1 2481 104 + 1
UUGAUAUUCAGUCACACUUAAGAAGUGAAGAGGAUUUUCAAAACUACAGUAUUACCAUUAACCAAGUUGGUGGGUCCGACUUCAAAUCAAAAGCACCCAAGGCG
(((((....((((.((((.....))))....((((.......((....))....((((((((...))))))))))))))))....)))))..((.......)). ( -21.40)
>DroAna_CAF1 2173 104 + 1
UUGAUCGUCAGUCACACUUAAGAAGUGAAGAGGAUUUUAAAAACUACAGUAUUACCAUUAACCAAGUUGGUGGAUCCGAUUAUAAACAAAAGGCGCCAAAGGCG
.(((((........((((.....))))....((((.......((....))....((((((((...)))))))))))))))))...........((((...)))) ( -20.00)
>consensus
UUGAUAUUCAGUCACACUUAAGAAGUGAAGAGGAUUUUCAAAACUACAGUAUUACCAUUAACCAAGUUGGUGGGUCCGACUUCAAAUCAAAAGCACCCAAGGCG
(((((....((((.((((.....))))....((((.......((....))....((((((((...))))))))))))))))....)))))..((.......)). (-19.94 = -20.00 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:03 2006