Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,336,305 – 10,336,419 |
Length | 114 |
Max. P | 0.505863 |
Location | 10,336,305 – 10,336,419 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 77.49 |
Mean single sequence MFE | -26.34 |
Consensus MFE | -16.06 |
Energy contribution | -16.62 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.23 |
Mean z-score | -1.34 |
Structure conservation index | 0.61 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505863 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10336305 114 - 22407834 UUCGAACAUGGAGGGGAAAUUACUAUUUUUUUGCUUAUAUCCAUUAAAACGGCAGCCGUUUCAAGCUGCUGCUGCAGAUUUUCAUAUUUCUCGAUAUCCGAGUCCUUUUG---CAGU .......(((((((.((((.........)))).))....))))).....(((((((........)))))))(((((((...........((((.....))))....))))---))). ( -25.86) >DroVir_CAF1 345 117 - 1 UUCGAACAUGGAGGCGAUAUGACAAUUUUUUUACUUAUAUCCAUAAGUACUGCUGCAGUCUCUAAUUGCUGUUGCAAAUUCUUGUAUUGUUCAACAUCUGAAACUUUAGUAUGUAGU ...(((((((((((((((((((............))))))).....(((....))).))))))).((((....))))..........))))).((((((((....)))).))))... ( -24.60) >DroPse_CAF1 4926 114 - 1 UUCGAGCACGGAGGUGAAAUUACAAUUUUUUUACUUAUAUCCAUAAGAACUGCUGCAGUCUCCAGUUGCUGUUGCAAGCUUUGAAACUGUUCAAUGUCAGAAUCUUUGUG---AAAU ......(((((((((..................(((((....)))))..((((.(((((.((.((((((....)).))))..)).))))).....).))).)))))))))---.... ( -23.40) >DroWil_CAF1 76507 114 - 1 UUGGAGCAUGGAGGCGAAAUGACAAUUUUUUUGCUUAUAUCCAUAAGUACAGCGGCAGUCUCUAGUUGCUGCUGCAAAUUUCUAUAUUGUUCAAUUUCCGUUUCGUCUUC---CACC ........(((((((((((((..........(((((((....)))))))..((((((((........)))))))).......................))))))).))))---)).. ( -33.70) >DroMoj_CAF1 330 117 - 1 UUCGAGCAUGGAGGUGAUAUGACAAUUUUUUUACUUAUAGUCAUAAGCACUGCCGCAGUUUCUAAUUGCUGCUGCAAAUUCUUAUAUUGCUCAAUAUCUGAAUCAUUGUUAUGUAAG ...(((((..((((((.((((((................))))))..)))(((.(((((........))))).)))....)))....)))))......................... ( -27.09) >DroPer_CAF1 7621 114 - 1 UUCGAGCACGGAGGUGAAAUUACAAUUUUUUUACUUAUAUCCAUAAGAACUGCUGCAGUCUCCAGUUGCUGUUGCAAGCUUUGAAACUGUUCAAUGUCAGAAUCUUUGUG---AAAU ......(((((((((..................(((((....)))))..((((.(((((.((.((((((....)).))))..)).))))).....).))).)))))))))---.... ( -23.40) >consensus UUCGAGCAUGGAGGUGAAAUGACAAUUUUUUUACUUAUAUCCAUAAGAACUGCUGCAGUCUCUAGUUGCUGCUGCAAAUUUUUAUAUUGUUCAAUAUCAGAAUCUUUGUG___AAAU ...(((((.((((((((((.........)))))))....))).........((.(((((........))))).))............)))))......................... (-16.06 = -16.62 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:02 2006