Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,333,736 – 10,333,895 |
Length | 159 |
Max. P | 0.998314 |
Location | 10,333,736 – 10,333,855 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.98 |
Mean single sequence MFE | -32.92 |
Consensus MFE | -32.32 |
Energy contribution | -31.92 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.14 |
Mean z-score | -1.84 |
Structure conservation index | 0.98 |
SVM decision value | 3.06 |
SVM RNA-class probability | 0.998314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10333736 119 - 22407834 AAUUACCAAACGAGGGCUCCAGCGAUAGUCGCGUUAGCUGCAUGAUUCAUCUCGGCAUCGCGAUAAAUCAGUGAUUAUGCUAAUGUGCU-UCUGUGAUAAAACAUCAAGGCUAUUGCAAC .....((......))......(((((((((((((((((..(((((((.(((.((....)).))).))))).)).....))))))))...-....((((.....)))).)))))))))... ( -33.10) >DroSec_CAF1 1674 119 - 1 AAUUACCAAACGAGGGCUCCAGCGAUAGUCGCGUUAGCUGCAUGAUUCAUCUCGGCAUCGCGAUAAAUCAGUGAUUAUGCUAAUGUGAU-UCUGUGAUAAAACAUCAAGGCUAUUGCAAC .....((......))......(((((((((((((((((..(((((((.(((.((....)).))).))))).)).....))))))))...-....((((.....)))).)))))))))... ( -33.10) >DroSim_CAF1 1743 119 - 1 AAUUACCAAACGAGGGCUCCAGCGAUAGUCGCGUUAGCUGCAUGAUUCAUCUCGGCAUCGCGAUAAAUCAGUGAUUAUGCUAACGUGAU-UCUGUGAUAAAACAUCAAGGCUAUUGCAAC .....((......))......(((((((((((((((((..(((((((.(((.((....)).))).))))).)).....))))))))...-....((((.....)))).)))))))))... ( -34.90) >DroEre_CAF1 1783 119 - 1 AAUUACCAAACGAGGGCUCCAGCGAUAGUCGCGUUAGCUGCAUGAUUCAUCUUGGCAUCGCGAUAAAUCAGUGAUUAUGCUAAUGCGUU-UCUGUGAUAAAACAUCAAGGCUAUUGCAAC .....((......))......(((((((((((((((((..(((((((.(((.((....)).))).))))).)).....))))))))...-....((((.....)))).)))))))))... ( -33.40) >DroYak_CAF1 1737 120 - 1 AAUUACCAAACGAGGGCUCCAGCGAUAGUCGCAUUAGAUGCAUGGUUCAUCUCGGCAUCGCUAUAAAUCAGUGAUUAUGCUAAUGUAUUUUGUGUGAUAAAACAUCAAGGCUAUUGCAAC .....((......))......(((((((((((((.((((((((((......))(((((((((.......)))))...)))).)))))))).))))(((.....)))..)))))))))... ( -30.10) >consensus AAUUACCAAACGAGGGCUCCAGCGAUAGUCGCGUUAGCUGCAUGAUUCAUCUCGGCAUCGCGAUAAAUCAGUGAUUAUGCUAAUGUGAU_UCUGUGAUAAAACAUCAAGGCUAUUGCAAC .....((......))......(((((((((((((((((..(((((((.(((.((....)).))).))))).)).....))))))))........((((.....)))).)))))))))... (-32.32 = -31.92 + -0.40)
Location | 10,333,775 – 10,333,895 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.67 |
Mean single sequence MFE | -34.08 |
Consensus MFE | -32.40 |
Energy contribution | -32.64 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.39 |
Structure conservation index | 0.95 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10333775 120 + 22407834 GCAUAAUCACUGAUUUAUCGCGAUGCCGAGAUGAAUCAUGCAGCUAACGCGACUAUCGCUGGAGCCCUCGUUUGGUAAUUUGAACGGGAAACUAGAUCAAAUGAGCGAAAAAUCUGUGGC ......((((.(((((.((((..((((.((((((....(.((((.............)))).)....))))))))))((((((.(((....)).).))))))..)))).))))).)))). ( -34.52) >DroSec_CAF1 1713 120 + 1 GCAUAAUCACUGAUUUAUCGCGAUGCCGAGAUGAAUCAUGCAGCUAACGCGACUAUCGCUGGAGCCCUCGUUUGGUAAUUUGAACGGGAAACUAGAUCAAAUGAGCGAAAAAUCUGUGGC ......((((.(((((.((((..((((.((((((....(.((((.............)))).)....))))))))))((((((.(((....)).).))))))..)))).))))).)))). ( -34.52) >DroSim_CAF1 1782 120 + 1 GCAUAAUCACUGAUUUAUCGCGAUGCCGAGAUGAAUCAUGCAGCUAACGCGACUAUCGCUGGAGCCCUCGUUUGGUAAUUUGAACGGGAAACUAGAUCAAAUGAGCGAAAAAUCUGUGGC ......((((.(((((.((((..((((.((((((....(.((((.............)))).)....))))))))))((((((.(((....)).).))))))..)))).))))).)))). ( -34.52) >DroEre_CAF1 1822 120 + 1 GCAUAAUCACUGAUUUAUCGCGAUGCCAAGAUGAAUCAUGCAGCUAACGCGACUAUCGCUGGAGCCCUCGUUUGGUAAUUUGAACGGGAAACUAGAUCAAAUGAGCGACAAAUCUGUGAC ......((((.(((((.((((..(((((.(((((....(.((((.............)))).)....))))))))))((((((.(((....)).).))))))..)))).))))).)))). ( -35.42) >DroYak_CAF1 1777 120 + 1 GCAUAAUCACUGAUUUAUAGCGAUGCCGAGAUGAACCAUGCAUCUAAUGCGACUAUCGCUGGAGCCCUCGUUUGGUAAUUUGAACGGGAAACUAGAUCAAAUGAGCGAAAAAUCUGUGGC ......((((.(((((.(((((((((..(((((.......)))))...))....)))))))....(((((((((((.........((....))..)))))))))).)..))))).)))). ( -31.40) >consensus GCAUAAUCACUGAUUUAUCGCGAUGCCGAGAUGAAUCAUGCAGCUAACGCGACUAUCGCUGGAGCCCUCGUUUGGUAAUUUGAACGGGAAACUAGAUCAAAUGAGCGAAAAAUCUGUGGC ......((((.(((((.((((..((((.((((((....(.((((.............)))).)....))))))))))((((((.(((....)).).))))))..)))).))))).)))). (-32.40 = -32.64 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:56 2006