Locus 3539

Sequence ID 2L_DroMel_CAF1
Location 10,333,021 – 10,333,123
Length 102
Max. P 0.642124
window5585

overview

Window 5

Location 10,333,021 – 10,333,123
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 92.77
Mean single sequence MFE -20.42
Consensus MFE -15.36
Energy contribution -15.60
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.86
Structure conservation index 0.75
SVM decision value 0.23
SVM RNA-class probability 0.642124
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10333021 102 + 22407834
UAUACUUAGUGUUCUGCAACUUGUAAAAACAGUCAUUUAAUAUUAAGGAA-ACACGUACCCCUGUGCGGCAAAUAUAUGUUGCGCCUAAUAAAUGACACGACA
..(((..(((........))).)))......((((((((.......(...-.)..........((((((((......))))))))....))))))))...... ( -22.20)
>DroSec_CAF1 1015 102 + 1
UAUACUUAGUGUUCUGCAACUUGUAAAAACAGUCAUUUAAUAUUAAGGAA-ACACGUACCUCUGUGCGACAAAUAUAUGUUGCGCCUAAUAAAUGACACGACA
..(((..(((........))).)))......((((((((.......(...-.)..........((((((((......))))))))....))))))))...... ( -22.70)
>DroSim_CAF1 1015 102 + 1
UAUACUUAGUGUUCUGCAACUUGUAAAAACAGUCAUUUAAUAUUAAGGAA-ACACGUACCUCUGUGCGGCAAAUAUAUGUUGCGACUAAUAAAUGACACGACA
..(((..(((........))).)))......((((((((.......(...-.).(((((....)))))((((.......))))......))))))))...... ( -19.90)
>DroEre_CAF1 1031 101 + 1
UAUA-UUAGUGUUCUGCAACUUGUAAAAACAGUCAUUUAAUAUUAAGGAA-AAACUUACUUCUGUGCGGUAAAUAUAUUUUGCAACGAAUAAAUGACACCACA
....-...(((...(((.....)))......((((((((....((((...-...)))).(((.((...(((((.....))))).)))))))))))))..))). ( -16.80)
>DroYak_CAF1 1013 103 + 1
UAUACUUAGUGUUCUGCAACAUGUAAAAACAGUCAUUUAAUAUUAAGGAAAAAACGUACCUCUGUGCGGCAAAUAUAUUUUGCUCUCAAUAAAUGACACCACA
........(((...(((.....)))......((((((((...............(((((....)))))(((((.....)))))......))))))))..))). ( -20.50)
>consensus
UAUACUUAGUGUUCUGCAACUUGUAAAAACAGUCAUUUAAUAUUAAGGAA_ACACGUACCUCUGUGCGGCAAAUAUAUGUUGCGCCUAAUAAAUGACACGACA
.........((((.(((.....)))..))))((((((((...............(((((....)))))((((.......))))......))))))))...... (-15.36 = -15.60 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:53 2006