Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,330,911 – 10,331,010 |
Length | 99 |
Max. P | 0.528675 |
Location | 10,330,911 – 10,331,010 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 93.27 |
Mean single sequence MFE | -10.70 |
Consensus MFE | -9.59 |
Energy contribution | -9.70 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.67 |
Structure conservation index | 0.90 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528675 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10330911 99 - 22407834 AACAAUCGUUUAAAUAAAGCAAAUACAAGAAAUUAUAAUUGCAAGUAACUUUGACUAUCUUCAGAUAUUUCUGUUACAAAAAUUUGCACCUACACCAAC .......((.(((((...((((.((.((....)).)).))))..(((((...((.((((....))))..)).)))))....))))).)).......... ( -12.80) >DroSec_CAF1 5833 99 - 1 AACAAUCGUUUAAACAAAGCAAAUACAAGAACUUAUAAUUGCAAGUAACUUUAACUAUCUUCAAAUAAUUCUGUUACACAAAUUUGCACCUGCACCAAC ..................((((((.(((..........)))...(((((.......................)))))....))))))............ ( -7.80) >DroSim_CAF1 5830 97 - 1 --CAAUCGUUUAAAUAAAGCAAAUACAAGAACUUAUAAUUGCAUGUAACUUUAACUAUCUUCAGAUAAUUCUGUUACACAAAUUUGCACCUACACCAAC --................((((((.(((..........)))..((((((...((.((((....)))).))..))))))...))))))............ ( -11.50) >consensus AACAAUCGUUUAAAUAAAGCAAAUACAAGAACUUAUAAUUGCAAGUAACUUUAACUAUCUUCAGAUAAUUCUGUUACACAAAUUUGCACCUACACCAAC ..................((((((.(((..........)))...(((((...((.((((....)))).))..)))))....))))))............ ( -9.59 = -9.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:52 2006