| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,330,530 – 10,330,626 |
| Length | 96 |
| Max. P | 0.519410 |
| Location | 10,330,530 – 10,330,626 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 75.51 |
| Mean single sequence MFE | -23.42 |
| Consensus MFE | -11.82 |
| Energy contribution | -12.44 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.50 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10330530 96 + 22407834 GGUUGGUGAUGCCCUUUGUUAUAUAGAUAUCCAUUCUUGGCAUGGGCAUUGGAAUAAGUUGUCUAGAAGAAAUAAA---------------AA-AGUUUAGAUGACUUAAAU .......(((((((..(((((...(((.......)))))))).)))))))....(((((..((((((.........---------------..-..))))))..)))))... ( -25.32) >DroSec_CAF1 5436 92 + 1 GGUUGGUGAUGCCCUUUGUUAUAUAGAUAUCCAUUCUCGGCAUGGGCAUUGGAAUAAGUUGUCUAGAAGAA----U---------------AU-AGAUUAGAUGACUUAAAU .......(((((((..((((....(((.......))).)))).)))))))....(((((..(((((.....----.---------------..-...)))))..)))))... ( -22.20) >DroSim_CAF1 5432 92 + 1 GGUUGGUGAUGCCCUUUGUUAUAUAGAUAUCCAUUCUUGGCAUGGGCAUUGGAAUAAGUUGUCUAGAAGAA----U---------------AU-AGAUUAGAUGAUUUAAAU .......(((((((..(((((...(((.......)))))))).)))))))....(((((..(((((.....----.---------------..-...)))))..)))))... ( -21.40) >DroEre_CAF1 5451 111 + 1 GGUUGGUGAUGCCCUUUGUUAUAUAGAUAUCCAUUCUAGAGCUGGGCAUUGGAAUAAGUUGUCUAGACGAAAUGGCAACGAUGACCAAAUAUU-GGAUUAGAUGACUUAAAU .......(((((((...(((...((((.......)))).))).)))))))....(((((..(((((......((....))....(((.....)-)).)))))..)))))... ( -30.80) >DroYak_CAF1 5427 111 + 1 GGUUGGUAAUGCCCUUUGUUAUAUAGAUAUCCAUUCUUGAGCUGGGCAUUGGAAUAAGUUGUCUAGACGAAAUGGCAACGAUGACAAAUGGUU-AGAUUAGAUGACUUAAAU ......((((((((...(((....(((.......)))..))).))))))))...(((((..(((((.(....((....)).((((.....)))-)).)))))..)))))... ( -28.90) >DroAna_CAF1 5689 91 + 1 GGUUGAUAAUACCCUUCGUUAUAUAAAUAUCCAUUUUUGAGCUAGGCAUUUCUUCUAGUGUACU----GAAAUGAA---------------AUAACGUUAUUUGA--UAUAU (((.......))).............(((((((((((...((((((.......)))))).....----))))))((---------------(((....)))))))--))).. ( -11.90) >consensus GGUUGGUGAUGCCCUUUGUUAUAUAGAUAUCCAUUCUUGACAUGGGCAUUGGAAUAAGUUGUCUAGAAGAAAUG_A_______________AU_AGAUUAGAUGACUUAAAU .......(((((((..........(((.......)))......)))))))....(((((..(((((...............................)))))..)))))... (-11.82 = -12.44 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:52 2006