Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,320,511 – 10,320,631 |
Length | 120 |
Max. P | 0.998927 |
Location | 10,320,511 – 10,320,631 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.99 |
Mean single sequence MFE | -28.35 |
Consensus MFE | -24.80 |
Energy contribution | -24.72 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.22 |
Mean z-score | -2.42 |
Structure conservation index | 0.87 |
SVM decision value | 3.29 |
SVM RNA-class probability | 0.998927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10320511 120 - 22407834 GUCACCUGCUUAAUCAGUUAGCAACGUUGACAAUUAAUUUGCCUCUGGAAAUCGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUUGUACUCAGUUUGCUGAUAAAAAACAUGAU ((((........((((((.(((..(((((((..........((...))...((....))..)))))))(((...(((..........)))..)))...))).))))))........)))) ( -24.69) >DroSec_CAF1 1410 120 - 1 GUCACCUGCUUAAUCAGUUAGCAACGUUGACAUUUAAUUUGCCUCUGGAAAUCGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUAGUACUCAGUUAACUGAUAAAAAACAUGAC ((((........((((((((((..(((((((..........((...))...((....))..)))))))(((.(((((..........))))))))...))))))))))........)))) ( -30.69) >DroSim_CAF1 1406 120 - 1 GUCACCUGCUUAAUCAGUUAGCAACGUUGACAUUUAAUUUGCCUCUGGAAAUCGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUAGUACUCAGUUAACUGAUAAAAAACAUGAU ((((........((((((((((..(((((((..........((...))...((....))..)))))))(((.(((((..........))))))))...))))))))))........)))) ( -29.39) >DroEre_CAF1 1369 119 - 1 GUUACCUGCUUAAUCACUUGGCAACGUUGACAUUUCAUUUGUCUCUGGAAAUUGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUAGUACUCAGUUAUUUGAUAAG-AACGUGAU (((((...((((.(((..((((..(((((((.(((((....((....))...)))))....)))))))(((.(((((..........))))))))...))))..)))))))-...))))) ( -27.30) >DroYak_CAF1 1409 119 - 1 GUCACCUGCUUAAUCAGUUAGCAACGUUGACAUUUAAUUUGCCUCUGAAAAUCGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUAGCACUCGGCUAUCUGAUAAG-AACAUGAU ((((....((((.((((.((((..(((((((......(((......)))..((....))..))))))).....((((((((....))))).)))....)))).))))))))-....)))) ( -29.70) >consensus GUCACCUGCUUAAUCAGUUAGCAACGUUGACAUUUAAUUUGCCUCUGGAAAUCGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUAGUACUCAGUUAACUGAUAAAAAACAUGAU ((((.....((.((((((((((..(((((((......(((......)))..((....))..)))))))(((.(((((..........))))))))...)))))))))).)).....)))) (-24.80 = -24.72 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:49 2006