Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,311,821 – 10,311,917 |
Length | 96 |
Max. P | 0.788645 |
Location | 10,311,821 – 10,311,917 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 88.27 |
Mean single sequence MFE | -20.81 |
Consensus MFE | -19.32 |
Energy contribution | -20.99 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.06 |
Mean z-score | -1.61 |
Structure conservation index | 0.93 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10311821 96 + 22407834 --------GUUUGACACAAAUCAUAACAUUGGCAUAUGUACAAUAUAUGUACACAUCU----GUAUGUACAUAAAAGAUCAUGUGUUACCGAGGUUUUCAUUCUGAAA --------...(((((((.(((...((((......))))......((((((((.....----...))))))))...)))..))))))).......((((.....)))) ( -17.10) >DroSec_CAF1 3585 108 + 1 AAUAAGCAGUUUGACACAAAUCAUAACAUUGGCAUAAGUACAAUAUAUGAACAUAUGUAGAUAUGUGUACAUAGAAGAUCAUGUGUUACCGAGGUUUUCAUUCUGAAA ......(((..(((...(((((.........((....))..(((((((((.(.((((((.(....).))))))...).))))))))).....))))))))..)))... ( -18.60) >DroSim_CAF1 3821 108 + 1 AAUAAGCAGUUUGACACAAAUCAUAACAUUGGCAUAUGUACAAUAUAUGUACAUAUGUAGAUAUAUGUACAUAGAAGAUCAUGUGUUACCGAGGUUUUCAUUCUGAAA ......(((..(((...(((((.......(((((((((.......((((((((((((....))))))))))))......)))))))))....))))))))..)))... ( -26.72) >consensus AAUAAGCAGUUUGACACAAAUCAUAACAUUGGCAUAUGUACAAUAUAUGUACAUAUGUAGAUAUAUGUACAUAGAAGAUCAUGUGUUACCGAGGUUUUCAUUCUGAAA ......(((..(((...(((((.......(((((((((.......((((((((((((....))))))))))))......)))))))))....))))))))..)))... (-19.32 = -20.99 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:45 2006