Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,108,118 – 1,108,222 |
Length | 104 |
Max. P | 0.918880 |
Location | 1,108,118 – 1,108,222 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.17 |
Mean single sequence MFE | -41.15 |
Consensus MFE | -27.92 |
Energy contribution | -28.90 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.33 |
Mean z-score | -2.04 |
Structure conservation index | 0.68 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1108118 104 + 22407834 UGUUGUUGUUGGGUG-AGCAGUGGGUGGCACUCGCAGUGCUUUUUGCACGGCCGCCGCCCGAUUUGCACUCAGCAAGCGAUACAUUCCGAUG----AACUGCAGCUAGA (((((((((((((((-.....((((((((....((.((((.....)))).)).)))))))).....)))))))).)))))))..........----............. ( -41.00) >DroVir_CAF1 34985 103 + 1 -GCAACUGUUUGUUGAGGCAGGCGUUGGCAGCCGCAGCACCCGUUGCAUGGCUGUGGCACGAUUGCCGCCCAACAAACGAUACAUUUUGACUGUGCAAUUGCAA----- -((((..((((((((.(((.(((((((...((((((((............)))))))).))).)))))))))))))))(.((((.......)))))..))))..----- ( -41.70) >DroSec_CAF1 26679 100 + 1 ----GUUGUUGGGUG-AGCAGUGGGUGGCACUCGCAGUGCUUUUUGCACGGCCGCCGCCCGAUUUGCAGUCAGCAAGCGAUACAUUCCGAUG----AACUGCAGCUAGA ----.(((((((.((-.....((((((((....((.((((.....)))).)).)))))))).....)).)))))))(((...(((....)))----...)))....... ( -36.20) >DroSim_CAF1 26498 104 + 1 UGUUGUUGUUGGGUG-AGCAGUGGGUGGCACUCGCAGUGCUUUUUGCACGGCCGCCGCCCGAUUUGCACUCAGCAAGCGAUACAUUCCGAUG----AACUGCAGCUAGA (((((((((((((((-.....((((((((....((.((((.....)))).)).)))))))).....)))))))).)))))))..........----............. ( -41.00) >DroEre_CAF1 29453 104 + 1 UGUAGUUGCUGGGUG-AGCGGUGGGUGGGCCUCGCAGUGCUUUUUGCACGGCUGCCGCCCGAUUUGCACCCAACAGGCGGUACAUUUCGAUG----AGCUGCAGCUAGA ..(((((((((((((-.....((((((((((..((((......))))..)))..))))))).....)))))).((..(((......))).))----....))))))).. ( -42.80) >DroYak_CAF1 27730 104 + 1 UGUAGUUGUUGGGUG-AGCGGUGGGCGGUAUUCGCAGUGCCUUUUGCACGGCUGCCGCCCGAUUUGCACCCAACAAACGAUACAUUCCGAUA----AGUUGCAGCUAGA ((((.((((((((((-.....(((((((((...((.((((.....)))).))))))))))).....))))))))))....))))........----(((....)))... ( -44.20) >consensus UGUAGUUGUUGGGUG_AGCAGUGGGUGGCACUCGCAGUGCUUUUUGCACGGCCGCCGCCCGAUUUGCACCCAACAAGCGAUACAUUCCGAUG____AACUGCAGCUAGA .....((((((((((......((((((((....((.((((.....)))).)).)))))))).....))))))))))................................. (-27.92 = -28.90 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:45 2006