| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,292,268 – 10,292,371 |
| Length | 103 |
| Max. P | 0.520562 |
| Location | 10,292,268 – 10,292,371 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.05 |
| Mean single sequence MFE | -11.80 |
| Consensus MFE | -10.95 |
| Energy contribution | -10.73 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | 0.09 |
| Structure conservation index | 0.93 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520562 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10292268 103 + 22407834 UUAAAGCUUUUUAACAAUUACUCAAUACACAACACUAUUUUUAUUCACACAAAUAUCUAGCAGCACAGCUCGAAAAUUGAUUAUAGAGAUUACAUGUGGACGA----------------- ...........................((((.....((((((((.....(((.(.((.(((......))).)).).)))...))))))))....)))).....----------------- ( -11.10) >DroSim_CAF1 6663 120 + 1 UUAAAGCUUUUUUACAAUUACUCAAUACACAACACUAUUUUUAUUCACACAAAUAUCCAGCAGCACAGCUCGAAAAUUGAUUAUGGAGAUUACAUGUGGACGAUACAUUUAACAAUCCAU .....................(((((...............((((......))))((.(((......))).))..)))))..(((((..(((.(((((.....))))).)))...))))) ( -12.70) >DroYak_CAF1 9873 93 + 1 UUA----------AUAAUUACUCAAUACACAACACUAUUUUUAUUCACACAAAUAUCCAGCAGCGCAGCUCGAAAAUUGAUUAUAGAGAUGACAUGUGGACGA----------------- ...----------..............((((....(((((((((.....(((.(.((.(((......))).)).).)))...)))))))))...)))).....----------------- ( -11.60) >consensus UUAAAGCUUUUU_ACAAUUACUCAAUACACAACACUAUUUUUAUUCACACAAAUAUCCAGCAGCACAGCUCGAAAAUUGAUUAUAGAGAUUACAUGUGGACGA_________________ ...........................((((.....((((((((.....(((.(.((.(((......))).)).).)))...))))))))....))))...................... (-10.95 = -10.73 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:41 2006