Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,288,544 – 10,288,636 |
Length | 92 |
Max. P | 0.705858 |
Location | 10,288,544 – 10,288,636 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 84.91 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -21.99 |
Energy contribution | -21.97 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.22 |
Mean z-score | -1.58 |
Structure conservation index | 0.88 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705858 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10288544 92 - 22407834 UGCAGCGUCGACAUCGGGUCAAAAUGGUGGGAACCUACUAAUUGAGGUGAUCGCCAGUGUCCUAGAUAACGAGGUA-----UAAACAAUAAGCAGUC ....((.(((..((((((.((...((((((..((((........))))..)))))).)).))).)))..))).)).-----................ ( -27.00) >DroSec_CAF1 1185 92 - 1 UGCAGCGUCGACAUCGGGUCAAAAUGGUGGGAACCUACUAAUUGAGGUAGUCGCCAGUGUCCUAGAUAACGAGGUA-----UAUAUAAUAGACAAUA ....((.(((..((((((.((...((((((..((((........))))..)))))).)).))).)))..))).)).-----................ ( -25.40) >DroSim_CAF1 2895 92 - 1 UGCAGCGUCGACAUCGGGUCAAAAUGGUGGGAACCUACUAAUUGAGGUGAUCGCCAGUGUCCUAGAUAACGAGGUA-----UAUAUAAUAGACAAUA ....((.(((..((((((.((...((((((..((((........))))..)))))).)).))).)))..))).)).-----................ ( -27.00) >DroEre_CAF1 6264 92 - 1 UGCAGCGUCGACAUCGGGCCAAAAUGGUGGGAACCUACUAAUUGAGGUGGUCGCCAGUGUCCUAGAUAACGAGGUA-----UAAACAAAUGGCAAAC (((.((.(((..((((((.((...((((((..((((........))))..)))))).)).))).)))..))).)).-----....(....))))... ( -26.30) >DroYak_CAF1 6234 92 - 1 UGCGGCGUCGACAUCGGAGCAAAAUGGUGGGAACCUACUCAUUGAGGUGGUCGCCAGUGUCCUAGAUAACGAGGUA-----UAAACAACUUGCAAUC ((((((.(((..(((((..((...((((((..((((........))))..)))))).))..)).)))..))).)).-----.........))))... ( -25.30) >DroPer_CAF1 16807 97 - 1 UACCACCUCAACAAUAGCUCAAAAUGGUGGAAACUUACUUAUUGAGGUAGUUGCCAGUGUCCUAGAUAACGAGGUAAUUUUUAAACACUUUUAAAUA ....(((((.....(((..((...(((..(..((((........))))..)..))).))..)))......)))))...................... ( -18.90) >consensus UGCAGCGUCGACAUCGGGUCAAAAUGGUGGGAACCUACUAAUUGAGGUGGUCGCCAGUGUCCUAGAUAACGAGGUA_____UAAACAAUAGGCAAUA ....((.(((..((((((.((...((((((..((((........))))..)))))).)).))).)))..))).))...................... (-21.99 = -21.97 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:37 2006