Locus 3524

Sequence ID 2L_DroMel_CAF1
Location 10,284,858 – 10,284,975
Length 117
Max. P 0.569907
window5565

overview

Window 5

Location 10,284,858 – 10,284,975
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 77.32
Mean single sequence MFE -37.67
Consensus MFE -22.46
Energy contribution -22.86
Covariance contribution 0.40
Combinations/Pair 1.50
Mean z-score -1.46
Structure conservation index 0.60
SVM decision value 0.07
SVM RNA-class probability 0.569907
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10284858 117 - 22407834
AACGUCGGCCUCGGAAGUUCCCUCGACUUCCGAAGUGGCUACCCACACCGGUUUGCUGGAGACAUUUGCCGCGAUUGCUCGUCGCCGUACCUCCCAAGGUACCAAUAUACAGGAUAA
...((((((((((((((((.....)))))))))...)))).......((((....)))).))).....(((((((.....))))).((((((....)))))).........)).... ( -39.90)
>DroGri_CAF1 4040 114 - 1
UU---CCUCGUCGGAGGUCUCAUCCACAUCUGAGGUGGCCGUCCAUACGGGUCUGCUGGAAACAUUUGCGGCGAUCGCUCGUCGUCGCACCUCGCAGGACACCAACAACGAGGAGAA
((---((((((.(((((((....((........)).)))).)))....((((((((((....))..(((((((((.....)))))))))....))).))).))....)))))))).. ( -46.60)
>DroEre_CAF1 2557 117 - 1
AACUUCAGCUUCGGAGGUUCCCUCGACUUCCGAAGUGGCUACCCACACCGGUUUGCUGGAGACAUUUGCCGCAAUUGCUCGUCGUCGUACCUCACAAGGUACCAAUAUACAGGAUAA
..(((((((((((((((((.....))))))))))((((....))))........))))))).......((((....))........((((((....)))))).........)).... ( -37.60)
>DroWil_CAF1 310912 117 - 1
UACCUCAGCAUCUGAAGUGUCAUCAACUAUAGAGGUAUCAGCACAUACUGGACUACUAGAAACAUUUGGUGCAAUAGCGCGUCGUCGUACGUCACAAGGUGCCAACAUCCAAGAUAA
((((((......(((.......)))......))))))...((((...((((....)))).....((((((((....))))(.((.....)).).))))))))............... ( -22.70)
>DroYak_CAF1 2510 117 - 1
AACUUCAGCUUCGGAGGUCCCCUCGACUUCCGAAGUGGCUACCCACACCGGUUUGCUGGAGACAUUUGCCGCAAUCGCGCGUCGUCGUACCUCCCAAGGUACCAAUAUACAGGAUAA
...((((((((((((((((.....))))))))))((((....))))........))))))(((...(((.((....)))))..)))((((((....))))))............... ( -40.10)
>DroAna_CAF1 2973 117 - 1
GACUUCGGCAUCGGAGGUGCCGUCCACUUCGGAGGUGGCAACCCACACCGGACUGCUGGAGACAUUUGCUGCGAUCGCCCGCCGUCGGACUUCCCAAGGCACCAAUAUACAGGAAAA
......(((((((.((..((.((((.(....).((((........)))))))).))((....))....)).)))).))).(((...((....))...))).((........)).... ( -39.10)
>consensus
AACUUCAGCAUCGGAGGUCCCCUCGACUUCCGAAGUGGCUACCCACACCGGUCUGCUGGAGACAUUUGCCGCAAUCGCUCGUCGUCGUACCUCCCAAGGUACCAAUAUACAGGAUAA
.......((.(((((((((.....))))))))).(((((........((((....))))........)))))....))........((((((....))))))............... (-22.46 = -22.86 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:34 2006