Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,283,741 – 10,283,861 |
Length | 120 |
Max. P | 0.983963 |
Location | 10,283,741 – 10,283,861 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.17 |
Mean single sequence MFE | -41.07 |
Consensus MFE | -39.83 |
Energy contribution | -39.83 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.14 |
Structure conservation index | 0.97 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10283741 120 + 22407834 AUCUUCGGACAACACCGAUACACCGUGCUCCUUGACAUCCGAAUCGAUUUCGGACUGAUUGAGACCAUUGAUUUGAGUGAGCAGCUCGAGUACAUCGUCAACGGAGCACAGGUUAUUAUC ....((((......))))...(((((((((((((((.((((((.....))))))..............((((((((((.....)))))))).))..))))).))))))).)))....... ( -42.00) >DroSec_CAF1 3950 120 + 1 AUCUUCGGACAACACCGAUACACCGUGCUCCUUGACAUCCGAAUCGAUUUCGGACUGAUUGAGACCAUUGAUUUGAGUGAGCAGCUCGAGUACAUCGUCUACGGAGCACAGGUUAUUAUC ....((((......))))...((((((((((....((((((((.....)))))).))....((((...((((((((((.....)))))))).))..))))..))))))).)))....... ( -41.00) >DroSim_CAF1 3717 120 + 1 AUCUUCGGACAACACCGAUACACCGUGCUCCUUGACAUCCGAAUCGAUUUCGGACUGAUUGAGACCAUUGAUUUGAGUGAGCAGCUCGAGUACAUCGUCCACGGAGCACAGGUUAUUAUC ....((((......))))...((((((((((.((.((((((((.....)))))).)).....(((...((((((((((.....)))))))).))..))))).))))))).)))....... ( -40.20) >consensus AUCUUCGGACAACACCGAUACACCGUGCUCCUUGACAUCCGAAUCGAUUUCGGACUGAUUGAGACCAUUGAUUUGAGUGAGCAGCUCGAGUACAUCGUCAACGGAGCACAGGUUAUUAUC ....((((......))))...(((((((((((..(((((((((.....)))))).)).)..)(((...((((((((((.....)))))))).))..)))...))))))).)))....... (-39.83 = -39.83 + 0.00)
Location | 10,283,741 – 10,283,861 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.17 |
Mean single sequence MFE | -38.23 |
Consensus MFE | -36.87 |
Energy contribution | -36.87 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.96 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10283741 120 - 22407834 GAUAAUAACCUGUGCUCCGUUGACGAUGUACUCGAGCUGCUCACUCAAAUCAAUGGUCUCAAUCAGUCCGAAAUCGAUUCGGAUGUCAAGGAGCACGGUGUAUCGGUGUUGUCCGAAGAU .......(((((((((((.((((((((......(((...)))......)))..............(((((((.....))))))))))))))))))))).)).((((......)))).... ( -39.00) >DroSec_CAF1 3950 120 - 1 GAUAAUAACCUGUGCUCCGUAGACGAUGUACUCGAGCUGCUCACUCAAAUCAAUGGUCUCAAUCAGUCCGAAAUCGAUUCGGAUGUCAAGGAGCACGGUGUAUCGGUGUUGUCCGAAGAU .......((((((((((((.((((.((......(((.......)))......)).))))).....(((((((.....))))))).....))))))))).)).((((......)))).... ( -38.10) >DroSim_CAF1 3717 120 - 1 GAUAAUAACCUGUGCUCCGUGGACGAUGUACUCGAGCUGCUCACUCAAAUCAAUGGUCUCAAUCAGUCCGAAAUCGAUUCGGAUGUCAAGGAGCACGGUGUAUCGGUGUUGUCCGAAGAU .......(((((((((((...((((((......(((...)))......)))..............(((((((.....))))))))))..))))))))).)).((((......)))).... ( -37.60) >consensus GAUAAUAACCUGUGCUCCGUAGACGAUGUACUCGAGCUGCUCACUCAAAUCAAUGGUCUCAAUCAGUCCGAAAUCGAUUCGGAUGUCAAGGAGCACGGUGUAUCGGUGUUGUCCGAAGAU .......(((((((((((...((((((......(((...)))......)))..............(((((((.....))))))))))..))))))))).)).((((......)))).... (-36.87 = -36.87 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:33 2006