| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,283,581 – 10,283,701 |
| Length | 120 |
| Max. P | 0.856129 |
| Location | 10,283,581 – 10,283,701 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -34.90 |
| Consensus MFE | -34.90 |
| Energy contribution | -34.90 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.82 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856129 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10283581 120 - 22407834 AAAUUCAGGAUCCAUUGGUGCUAGCAAGCAACGCGCUGCCGAAUUGGUGCGAGAACCUAAACCAAUCCUGUCCCUUUCUGUUUCCGUUUGAGACCAGGCAGUUGUACUUCAACUGCACAU .....((((((....(((((((....)))..((((((........)))))).........)))))))))).......(((((((.....)))).)))(((((((.....))))))).... ( -35.10) >DroSec_CAF1 3790 120 - 1 AAAUUCAGGAUCCAUUGGUGCUAGCAAGCAACGCGCUGCCUAAUUGGUGCGAGAACCUAAACCAAUCCUGCCCCUUUCUGUUUCCGUUUGAGACCAGGCAGUUGUACUUCAACUGCACAU .....((((((....(((((((....)))..((((((........)))))).........)))))))))).......(((((((.....)))).)))(((((((.....))))))).... ( -34.90) >DroSim_CAF1 3557 120 - 1 AAAUUCAGGAUCCAUUGGUGCUAGCCAGCAACGCGCUGCCUAAUUGGUGCGAGAACCUAAACCAAUCCUGCCCCUUUCUGUUUCCGUUUGAGACCAGGCAGUUGUACUUCAACUGCACAU .....((((((....(((((((....)))..((((((........)))))).........)))))))))).......(((((((.....)))).)))(((((((.....))))))).... ( -34.70) >consensus AAAUUCAGGAUCCAUUGGUGCUAGCAAGCAACGCGCUGCCUAAUUGGUGCGAGAACCUAAACCAAUCCUGCCCCUUUCUGUUUCCGUUUGAGACCAGGCAGUUGUACUUCAACUGCACAU .....((((((....(((((((....)))..((((((........)))))).........)))))))))).......(((((((.....)))).)))(((((((.....))))))).... (-34.90 = -34.90 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:31 2006