Locus 3520

Sequence ID 2L_DroMel_CAF1
Location 10,283,061 – 10,283,181
Length 120
Max. P 0.646932
window5560

overview

Window 0

Location 10,283,061 – 10,283,181
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -37.33
Consensus MFE -33.14
Energy contribution -33.03
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.96
Structure conservation index 0.89
SVM decision value 0.24
SVM RNA-class probability 0.646932
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10283061 120 - 22407834
AAAUCGCAGGGAGCACGGAAUAUUCCCAGCCCCAUUACCACAGAAUUCUGAGAUAUGUGAGAAUGUGCUCAAAUAUUUCUGGUUCUUUGGAGUUUUUGUGGCAAAGGUUUUGCAGGACAU
....(((((((.((..(((....)))..)))))....(((.((((((..(((((((.((((......)))).))))))).)))))).)))......))))((((.....))))....... ( -34.90)
>DroSec_CAF1 3270 120 - 1
AAAUCGCAGGGAGCACGGCAUAUUCCCAGCCCCAUUACCGCAGAAUUCGGAGAUAUGUGAGAAUGUGCUCAAAUAUUUCUGGUUCUUUGGCGUUUUUGUGGCAAAGGUUUUGCAGGAUAU
........(((.((..((......))..)))))....(((((((((((((((((((.((((......)))).))))))))))..(((((.((......)).)))))))))))).)).... ( -36.10)
>DroSim_CAF1 3037 120 - 1
AAAUCGCAGGGAGCACGGCAUAUUCCCAGCUCCAUUGCCGCAGAAUUCGGAGAUAUGUGAGAAUGUGCUCAAAUAUUUCUGGUUCUUUGGCGUUUUUGUGGCAAAGGUUUUGCAGGAUAU
..((((((((((((..((......))..))))).)))).(((((((((((((((((.((((......)))).))))))))))..(((((.((......)).))))))))))))..))).. ( -41.00)
>consensus
AAAUCGCAGGGAGCACGGCAUAUUCCCAGCCCCAUUACCGCAGAAUUCGGAGAUAUGUGAGAAUGUGCUCAAAUAUUUCUGGUUCUUUGGCGUUUUUGUGGCAAAGGUUUUGCAGGAUAU
....(((((((.((..((......))..)))))....(((.(((((.(((((((((.((((......)))).)))))))))))))).)))......))))((((.....))))....... (-33.14 = -33.03 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:29 2006