Locus 3518

Sequence ID 2L_DroMel_CAF1
Location 10,282,701 – 10,282,821
Length 120
Max. P 0.877617
window5555

overview

Window 5

Location 10,282,701 – 10,282,821
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -27.60
Consensus MFE -27.60
Energy contribution -27.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 1.00
SVM decision value 0.90
SVM RNA-class probability 0.877617
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10282701 120 - 22407834
UUAUCAAUUCCUACAGGAAAUGCAAAACCUAUUGUUGCGAAAGCAAUCAAUCGAGUUUGACGAUACUAUAAGCGCGGAGAAGAAACAUGAGCUUAUCAACGAGCUUAAGCUGCAAACCCA
.((((..((((....))))...((((..(.((((((((....)))).)))).)..))))..))))........((((.(......).(((((((......)))))))..))))....... ( -27.60)
>DroSec_CAF1 2910 120 - 1
UUAUCAAUUCCUACAGGAAAUGCAAAACCUAUUGUUGCGAAAGCAAUCAAUCGAGUUUGACGAUACUAUAAGCGCGGAGAAGAAACAUGAGCUUAUCAACGAGCUUAAGCUGCAAACCCA
.((((..((((....))))...((((..(.((((((((....)))).)))).)..))))..))))........((((.(......).(((((((......)))))))..))))....... ( -27.60)
>DroSim_CAF1 2677 120 - 1
UUAUCAAUUCCUACAGGAAAUGCAAAACCUAUUGUUGCGAAAGCAAUCAAUCGAGUUUGACGAUACUAUAAGCGCGGAGAAGAAACAUGAGCUUAUCAACGAGCUUAAGCUGCAAACCCA
.((((..((((....))))...((((..(.((((((((....)))).)))).)..))))..))))........((((.(......).(((((((......)))))))..))))....... ( -27.60)
>consensus
UUAUCAAUUCCUACAGGAAAUGCAAAACCUAUUGUUGCGAAAGCAAUCAAUCGAGUUUGACGAUACUAUAAGCGCGGAGAAGAAACAUGAGCUUAUCAACGAGCUUAAGCUGCAAACCCA
.((((..((((....))))...((((..(.((((((((....)))).)))).)..))))..))))........((((.(......).(((((((......)))))))..))))....... (-27.60 = -27.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:24 2006