Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,282,501 – 10,282,621 |
Length | 120 |
Max. P | 0.982730 |
Location | 10,282,501 – 10,282,621 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -47.40 |
Consensus MFE | -47.64 |
Energy contribution | -47.20 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -2.63 |
Structure conservation index | 1.01 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10282501 120 + 22407834 AGGCCUUCAUUUGCUGAGCGAUUCCGUCCUGCAGGAUGAAGUUCAUCAGCAGUUCGCAGUACGCUUCCAGGUUGUCGAUGGUGACGUUCACUGACGAUCCAUUGGGCAGCAAUUCGGCCU (((((.....(((((((((((((.((..((((..((((.....)))).))))..)).))).))))(((((((((((((((....))))....)))))))...))))))))))...))))) ( -47.60) >DroSec_CAF1 2710 120 + 1 AGGCCUUCAUUUGCUGAGCGAUUCCGUCCUGCAGGAUGAAGUUCAUCAGCAGUUCGCAGUACGCUUCCAGGUUGUCGAUGGUGACGUUCACUGACGAUCCAUUGGGCAGCAGUUCGGCCU (((((.....(((((((((((((.((..((((..((((.....)))).))))..)).))).))))(((((((((((((((....))))....)))))))...))))))))))...))))) ( -47.30) >DroSim_CAF1 2477 120 + 1 AGGCCUUCAUUUGCUGAGCGAUUCCGUCCUGCAGGAUGAAGUUCAUCAGCAGUUCGCAGUACGCUUCCAAGUUGUCGAUGGUGACGUUCACUGACGAUCCAUUGGGCAGCAGUUCGGCCU (((((.....(((((((((((((.((..((((..((((.....)))).))))..)).))).))))(((((...((((.(((((.....))))).))))...)))))))))))...))))) ( -47.30) >consensus AGGCCUUCAUUUGCUGAGCGAUUCCGUCCUGCAGGAUGAAGUUCAUCAGCAGUUCGCAGUACGCUUCCAGGUUGUCGAUGGUGACGUUCACUGACGAUCCAUUGGGCAGCAGUUCGGCCU (((((.....(((((((((((((.((..((((..((((.....)))).))))..)).))).))))(((((...((((.(((((.....))))).))))...)))))))))))...))))) (-47.64 = -47.20 + -0.44)
Location | 10,282,501 – 10,282,621 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -40.23 |
Consensus MFE | -39.25 |
Energy contribution | -39.03 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.71 |
Structure conservation index | 0.98 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10282501 120 - 22407834 AGGCCGAAUUGCUGCCCAAUGGAUCGUCAGUGAACGUCACCAUCGACAACCUGGAAGCGUACUGCGAACUGCUGAUGAACUUCAUCCUGCAGGACGGAAUCGCUCAGCAAAUGAAGGCCU (((((...((((((.(((..((.(((...(((.....)))...)))...))))).((((...(.((..((((.((((.....))))..))))..)).)..)))))))))).....))))) ( -40.70) >DroSec_CAF1 2710 120 - 1 AGGCCGAACUGCUGCCCAAUGGAUCGUCAGUGAACGUCACCAUCGACAACCUGGAAGCGUACUGCGAACUGCUGAUGAACUUCAUCCUGCAGGACGGAAUCGCUCAGCAAAUGAAGGCCU (((((....(((((.(((..((.(((...(((.....)))...)))...))))).((((...(.((..((((.((((.....))))..))))..)).)..)))))))))......))))) ( -39.60) >DroSim_CAF1 2477 120 - 1 AGGCCGAACUGCUGCCCAAUGGAUCGUCAGUGAACGUCACCAUCGACAACUUGGAAGCGUACUGCGAACUGCUGAUGAACUUCAUCCUGCAGGACGGAAUCGCUCAGCAAAUGAAGGCCU (((((....(((((.((((..(.(((...(((.....)))...))))...)))).((((...(.((..((((.((((.....))))..))))..)).)..)))))))))......))))) ( -40.40) >consensus AGGCCGAACUGCUGCCCAAUGGAUCGUCAGUGAACGUCACCAUCGACAACCUGGAAGCGUACUGCGAACUGCUGAUGAACUUCAUCCUGCAGGACGGAAUCGCUCAGCAAAUGAAGGCCU (((((....(((((.(((..((.(((...(((.....)))...)))...))))).((((...(.((..((((.((((.....))))..))))..)).)..)))))))))......))))) (-39.25 = -39.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:23 2006