Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,262,753 – 10,262,871 |
Length | 118 |
Max. P | 0.925506 |
Location | 10,262,753 – 10,262,871 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 99.58 |
Mean single sequence MFE | -36.80 |
Consensus MFE | -36.80 |
Energy contribution | -36.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.76 |
Structure conservation index | 1.00 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10262753 118 - 22407834 GUCAGUCGGCCGGACGCUUCAGGUCCCGCUCGCCGGUGGGAAACCAUCGAUUCUAAUGACAACACCACUCAUAGUUGCUUAAGGAUUGCCUAUGAGUAAAGAUUAAUAAAUAAUAACU ((((((.(((.((((.......)))).))).))((((((....)))))).......))))......((((((((..((.........))))))))))..................... ( -36.80) >DroSec_CAF1 4575 118 - 1 GUCAGUCGGCCGGACGCUUCAGGUCCCGCUCGCCGGUGGGAAACCAUCGAUUCUAAUGACAACACCACUCAUAGUUGCUUAAGGAUUGCCUAUGAGUAAAGAUUAAUAAAUAAUAACU ((((((.(((.((((.......)))).))).))((((((....)))))).......))))......((((((((..((.........))))))))))..................... ( -36.80) >DroSim_CAF1 5572 118 - 1 GUCAGUCGGCCGGACGCUUCAGGUCCCGCUCGCCGGUGGGAAACCAUCGAUUCUAAUGACAACACCACUCAUAGUUGCUUAAGGAUUGCCUAUGAGUAAAGAUUAAUAAAUAAUAACU ((((((.(((.((((.......)))).))).))((((((....)))))).......))))......((((((((..((.........))))))))))..................... ( -36.80) >DroYak_CAF1 4067 118 - 1 GUCAGUCGGCCGGACGCUUCAGGUCCCGCUCGCCGGUGGGAAACCAUCGAUUCUAAUGACAACACCACUCAUAGUUGCUUAAGGAUUGCCUAUGAGUAAAAAUUAAUAAAUAAUAACU ((((((.(((.((((.......)))).))).))((((((....)))))).......))))......((((((((..((.........))))))))))..................... ( -36.80) >consensus GUCAGUCGGCCGGACGCUUCAGGUCCCGCUCGCCGGUGGGAAACCAUCGAUUCUAAUGACAACACCACUCAUAGUUGCUUAAGGAUUGCCUAUGAGUAAAGAUUAAUAAAUAAUAACU ((((((.(((.((((.......)))).))).))((((((....)))))).......))))......((((((((..((.........))))))))))..................... (-36.80 = -36.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:15 2006