Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,261,051 – 10,261,141 |
Length | 90 |
Max. P | 0.800479 |
Location | 10,261,051 – 10,261,141 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -20.99 |
Energy contribution | -21.55 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.75 |
Structure conservation index | 0.88 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.800479 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10261051 90 - 22407834 AAAUGGUUGUAUCGAUGACCCAUCGAUAGUUUUUGCAUACACAAUUUAAUCGAGAGGGCACCACGCACGUCGAUAGCACUGGAUGUACAU ....(((..((((((((.((..(((((.....(((......)))....)))))..))((.....)).))))))))..))).......... ( -20.20) >DroSec_CAF1 2885 90 - 1 AAAUAGUUCUAUCGAUGGCCCAUCGAUAGUUUUUGCAUACACAAUUUAAUCGAGAGGGCACCACGCACGUCGAUAGCACUGGAUGUACAU ...((((.(((((((((((((.(((((.....(((......)))....)))))..))))........))))))))).))))......... ( -26.20) >DroSim_CAF1 3044 90 - 1 AAAUAGUUCUAUCGAUGGCCCAUCGAUAGUUUUUGCAUACACAAUUUAAUCGAGAGGGCACCACGCACGUCGAUAGCACUGGAUGUACAU ...((((.(((((((((((((.(((((.....(((......)))....)))))..))))........))))))))).))))......... ( -26.20) >DroYak_CAF1 2461 90 - 1 AAAUAGUUCCAUCGAUGGCCAAUCGAUAGUUUUUGCAUACACAAUUUAAUCGAAAGGGCCGCACGCACGUCGAUAGCAAUGCGUGUACAU ................((((..(((((.....(((......)))....)))))...))))(((((((.((.....))..))))))).... ( -22.40) >consensus AAAUAGUUCUAUCGAUGGCCCAUCGAUAGUUUUUGCAUACACAAUUUAAUCGAGAGGGCACCACGCACGUCGAUAGCACUGGAUGUACAU ...((((.(((((((((.((..(((((.....(((......)))....)))))..))((.....)).))))))))).))))......... (-20.99 = -21.55 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:14 2006