Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,257,967 – 10,258,058 |
Length | 91 |
Max. P | 0.500000 |
Location | 10,257,967 – 10,258,058 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 93.41 |
Mean single sequence MFE | -20.44 |
Consensus MFE | -17.49 |
Energy contribution | -17.60 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.83 |
Structure conservation index | 0.86 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10257967 91 - 22407834 AUAUUUCGAAGCAUUUUAAUAGAUGCUGCGAAAUUACCAAAUAAAUGUGCUUGCUCUCUUUUCAGAUUUCAAUCGUUUUUGAGGCAGAGAA ..((((((.(((((((....))))))).))))))....................((((((((((((...........))))))).))))). ( -21.10) >DroSec_CAF1 3293 91 - 1 AUAUUUCGAAGCAUUUUAAUAGAUGCUGCGAAAUUAACGACGAAAUGUGCUUGAUUUCUUUUCAGAUUUCAAUCGUUUUUGAGGCAGAAAA ...(((((.(((((((....))))))).)))))((((.(((((.......((((..(((....)))..))))))))).))))......... ( -20.31) >DroSim_CAF1 3310 91 - 1 AUAUUUCGAAGCAUUUUAAUAGAUGCUGCGAAAUUAACGAAGAAAUGUGCUUGAUUUCCUUUCAGAUUUCAAUCGUUUUCGAGGCAGAAAA ..((((((.(((((((....))))))).))))))...((((((....((.((((..((......))..)))).)))))))).......... ( -19.90) >consensus AUAUUUCGAAGCAUUUUAAUAGAUGCUGCGAAAUUAACGAAGAAAUGUGCUUGAUUUCUUUUCAGAUUUCAAUCGUUUUUGAGGCAGAAAA ..((((((.(((((((....))))))).))))))...........(.(((((((..((......))..))).(((....))))))).)... (-17.49 = -17.60 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:13 2006