Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,257,491 – 10,257,611 |
Length | 120 |
Max. P | 0.968270 |
Location | 10,257,491 – 10,257,611 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -22.49 |
Consensus MFE | -22.14 |
Energy contribution | -21.92 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -1.14 |
Structure conservation index | 0.98 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10257491 120 + 22407834 UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUCUUAAUGGACGGUUGAUUAAAUAUAUGAUUUCGUUUUAUUUCCUCUUUUGU .((((.(((...(((((((.(((((((((........)))))..)))).)))))))...(((((((..(((....)))..)))))))..))).))))....................... ( -23.80) >DroSec_CAF1 2817 120 + 1 UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUCUUAAUGGACGGUUGAUUAAAUAUAUGAUUUCGUUUUAUUUCCUCUUUUGU .((((.(((...(((((((.(((((((((........)))))..)))).)))))))...(((((((..(((....)))..)))))))..))).))))....................... ( -23.80) >DroSim_CAF1 2834 120 + 1 UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUCUUAAUGGACGGUUGAUUAAAUAUAUGAUUUCGUUUUAUUUCCUCUUUUGU .((((.(((...(((((((.(((((((((........)))))..)))).)))))))...(((((((..(((....)))..)))))))..))).))))....................... ( -23.80) >DroEre_CAF1 2767 120 + 1 UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUUUUAAUGGACGGUUGAUUAAAUAUAUGAUUUUUUUUUAGUUCCUCUUUUGU .((((((((...(((((((.(((((((((........)))))..)))).))))))).((((........))))))))))))..(((((((.............))))))).......... ( -22.02) >DroYak_CAF1 2790 120 + 1 UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUUUUAAUGGACGGUUGAUUAAAUAUAUGAUUUUUUUUUAGUUCCUCUUUUGU .((((((((...(((((((.(((((((((........)))))..)))).))))))).((((........))))))))))))..(((((((.............))))))).......... ( -22.02) >DroAna_CAF1 1853 120 + 1 UUCAUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUGUGAUUAAAUCAGUGUUUUUAAUGGACGGUUGAUUAAAUAUAUGAUUUUUUUUUAUUUCCUCUUUUGU .((((.(((...(((.(((.(((((((((........)))))..)))).))).)))...(((((.(((((.....))))).).))))..))).))))....................... ( -19.50) >consensus UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUCUUAAUGGACGGUUGAUUAAAUAUAUGAUUUCGUUUUAUUUCCUCUUUUGU .((((.(((...(((((((.(((((((((........)))))..)))).)))))))...(((((((..(((....)))..)))))))..))).))))....................... (-22.14 = -21.92 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:12 2006