Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,256,889 – 10,257,006 |
Length | 117 |
Max. P | 0.500000 |
Location | 10,256,889 – 10,257,006 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -35.30 |
Consensus MFE | -29.26 |
Energy contribution | -30.30 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.27 |
Structure conservation index | 0.83 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10256889 117 - 22407834 UAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAAACGAUCG---AUUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUAAUGUACAUAGGUGAGUGAGUGGGAGCCCAU ..((((((...((((......((((...(((((......)))))..)))).---.....))))...)))))).(((((((.((.(......).)).))))))).....((((....)))) ( -35.50) >DroSec_CAF1 2206 117 - 1 UAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCG---AUUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUAAUGUACAUAGGUGAGUGAGUGGGAGCCCCU ..((((((...((((......((((...(((((......)))))..)))).---.....))))...)))))).(((((((.((.(......).)).))))))).......(((...))). ( -33.70) >DroSim_CAF1 2223 117 - 1 UAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCG---AUUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUAAUGUACAUAGGUGAGUGAGUGGGAGCCCCU ..((((((...((((......((((...(((((......)))))..)))).---.....))))...)))))).(((((((.((.(......).)).))))))).......(((...))). ( -33.70) >DroEre_CAF1 2187 111 - 1 UAGCAG--ACAGGCUUACAGAGAUCCACUUCCUUUCACGGGGAACCGAUCG---GUUACAGCUGGGCUCUGCACACCUGUUUAGAAUUUAAUGUACAUAGGUGA----GUGGGAGCCCAU ......--...((((.((...((((...(((((......)))))..)))).---))...))))((((((..(.(((((((.((.(......).)).))))))).----)..).))))).. ( -36.60) >DroYak_CAF1 2198 114 - 1 UAGCAG--ACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCGGUGGUUAUAGCUGGGCUCUGCACAUCUGUUUAGAAUUUAAUGUACAUAGGUGA----GUGGGAGCCCAU ......--...((((..(((.((((...(((((......)))))..)))).))).....))))((((((..(.(((((((.((.(......).)).))))))).----)..).))))).. ( -37.00) >consensus UAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCG___AUUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUAAUGUACAUAGGUGAGUGAGUGGGAGCCCAU ..((((((...((((......((((...(((((......)))))..)))).........))))...)))))).(((((((.((.(......).)).))))))).....((((....)))) (-29.26 = -30.30 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:11 2006