Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,255,415 – 10,255,521 |
Length | 106 |
Max. P | 0.685047 |
Location | 10,255,415 – 10,255,521 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 72.01 |
Mean single sequence MFE | -13.76 |
Consensus MFE | -5.26 |
Energy contribution | -5.78 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.50 |
Mean z-score | -1.79 |
Structure conservation index | 0.38 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10255415 106 + 22407834 UAUCAGUUUUAUCUGAUUAAUAACUCAUUUUAUUACACUA---------UUUAGUUCUUUUCCUUUUUAGGGAGGUCCUAUA----UUUCUGUAUCCCGCAAACAAACAACAUUCAUUU .(((((......)))))................((((..(---------(.(((..((((.(((....)))))))..))).)----)...))))......................... ( -12.50) >DroSec_CAF1 580 96 + 1 UAUCAGCUUUAUCUGAUUAAUAACUCAUUUCAUUACACUA---------UUUAGUUCUUUUCUUUUUUAGGGAGGUCCUUUA----UUUCUGUAUCCCGAAAACAAAAA---------- .(((((......)))))..........((((..((((..(---------(..((..(((..((.....))..)))..))..)----)...))))....)))).......---------- ( -13.30) >DroSim_CAF1 574 96 + 1 UAUCAGCUUUAUCUGAUUAAUAACUCAUUUCUUUACACUA---------UUUAGUUCCUUUCUUUUUUAGGUAGGUCCUUUA----UUUCUGUAUCCCGAAAACAAAAA---------- .(((((......)))))..........((((..((((..(---------(..((..(((.(((.....))).)))..))..)----)...))))....)))).......---------- ( -12.30) >DroEre_CAF1 587 103 + 1 -------CUUAUCUGAUUAAUGACUCAUUUCCCUAGGAUCUUCUUUCACUUAAGUUCUUUCCUUUUUUAGGAAGGUCCUUU--------AUGUAUUCCUCCAACAAAAA-CAAUCUUUC -------.......((((................(((((((((((......(((.......)))....)))))))))))..--------.(((.........)))....-.)))).... ( -13.70) >DroYak_CAF1 575 108 + 1 UAUAUGCUUUAUCUGAAUAAUAACUCAUUUCCCUGGGUUA---------UUGAGUUCAUUCCUUU-UUAUGGAGGUCCUUUACACACAUAUGUAUUCCUCAAACAAAAA-CAAUCAUUC .............((((((((((((((......)))))))---------))..))))).......-.....((((.....((((......))))..)))).........-......... ( -17.00) >consensus UAUCAGCUUUAUCUGAUUAAUAACUCAUUUCAUUACACUA_________UUUAGUUCUUUUCUUUUUUAGGGAGGUCCUUUA____UUUCUGUAUCCCGCAAACAAAAA_CA_UC_UU_ ...................................................(((..(((((((.....)))))))..)))....................................... ( -5.26 = -5.78 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:10 2006