Locus 3507

Sequence ID 2L_DroMel_CAF1
Location 10,250,413 – 10,250,533
Length 120
Max. P 0.998994
window5538

overview

Window 8

Location 10,250,413 – 10,250,533
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.50
Mean single sequence MFE -28.84
Consensus MFE -29.00
Energy contribution -28.84
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -2.15
Structure conservation index 1.01
SVM decision value 3.32
SVM RNA-class probability 0.998994
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10250413 120 - 22407834
CUACUGCAAUCUGGUCACAUCGAUUUAAGUAACUUUGUUGUGAUCGAAUAUUCCAAUAGAUUUUCGUAUAUUGUAUUGUAUCCAUGUACAAUUAUUCUCAUGCGAAAGUGCCGCAGAUAG
(((((((....((((((((.(((...........))).)))))))).............((((((((((.....(((((((....))))))).......))))))))))...)))).))) ( -29.30)
>DroSec_CAF1 4442 120 - 1
CUACUGCAAUCUGGUCACACCGAUUUAAGUAACUUUGUUGUGAUCGAAUAUUCCAAUAGAUUUUCGUAUAUUGUAUUGUAUCCAUGUACAAUUAUUCUCAUGCGAAAGUGCCGCAGAUAG
(((((((....((((((((.(((...........))).)))))))).............((((((((((.....(((((((....))))))).......))))))))))...)))).))) ( -29.20)
>DroSim_CAF1 2873 120 - 1
CUACUGCAAUCUGGUCACACCGAUUUAAGUAACUUUGUUGUGAUCGAAUAUUCCAAUAGAUUUUCGUAUAUUGUAUUGUAUCCAUGUACAAUUAUUCUCAUGCGAAAGUGCCGCAGAUAG
(((((((....((((((((.(((...........))).)))))))).............((((((((((.....(((((((....))))))).......))))))))))...)))).))) ( -29.20)
>DroEre_CAF1 2872 120 - 1
CUACUGCAAUCUGGUCACACCGAUUUAAAUAACUUUGUUGUGAUCGAAUAUUCCAAUAGAUUUUCGUAUAUUGUAUUGUAUCCAUGUACAAUUAUUCUCAUGCGAAAGUGCCGCAGAUAG
(((((((....((((((((.(((...........))).)))))))).............((((((((((.....(((((((....))))))).......))))))))))...)))).))) ( -29.20)
>DroYak_CAF1 2839 120 - 1
CUACUGCAGUCUGGUCACACCGAUUUAAAUAACUUUGUUGUGAUCGAAUAUUCCAAUAGAUUUUCGUAUAUUGUAUUGUAUCCAUGUAUAAUUAUUCUCAUGCGAAAGUGCCGCAGAUAG
(((((((....((((((((.(((...........))).)))))))).............((((((((((.....(((((((....))))))).......))))))))))...)))).))) ( -27.30)
>consensus
CUACUGCAAUCUGGUCACACCGAUUUAAGUAACUUUGUUGUGAUCGAAUAUUCCAAUAGAUUUUCGUAUAUUGUAUUGUAUCCAUGUACAAUUAUUCUCAUGCGAAAGUGCCGCAGAUAG
(((((((....((((((((.(((...........))).)))))))).............((((((((((.....(((((((....))))))).......))))))))))...)))).))) (-29.00 = -28.84 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:07 2006