Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,242,901 – 10,243,012 |
Length | 111 |
Max. P | 0.925375 |
Location | 10,242,901 – 10,243,012 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 90.12 |
Mean single sequence MFE | -49.83 |
Consensus MFE | -39.25 |
Energy contribution | -38.37 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -4.23 |
Structure conservation index | 0.79 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10242901 111 + 22407834 UCUGUGCCAGUGCUACGCGAAUCGGCGGCGGCGGCUGGCUUUGCUGAAUUUAUAUUGAAUUUGGUGAGUGAGCUGCUGCUCACCGCGGUGGCGGUGGCAUUAUCGGGAAUC ...((((((.((((((.((...(((.((((((((((.((.(..(..(((((.....)))))..)..))).))))))))).).))))))))))).))))))........... ( -53.90) >DroSec_CAF1 2386 102 + 1 UCUGUGCCAGUGCUGCGCGAAUCGGC------GGCUGGCUUUACUGAAUUUAUAUUGAAUUUGGUGAGCGAGCUGCUGC---CGACGGUGGCGGUGGCAUUAUCCGGAAUC (((((((((.(((..(.((..(((((------(((.((((((((..(((((.....)))))..)))...))))))))))---))))))..))).))))).....))))... ( -47.30) >DroSim_CAF1 2351 102 + 1 UCUGUGCCAGUGCUGCGCGAAUCGGC------GGCUGGCUUUGCUGAAUUUAUAUUGAAUUUGGUGAGUGAGCCGCUGC---CGGCGGUGGCGGUGGCAUUAUCCGGAAUC (((((((((.(((..(.((...((((------(((.(((((.((..(((((.....)))))..))....))))))))))---)).)))..))).))))).....))))... ( -48.30) >consensus UCUGUGCCAGUGCUGCGCGAAUCGGC______GGCUGGCUUUGCUGAAUUUAUAUUGAAUUUGGUGAGUGAGCUGCUGC___CGGCGGUGGCGGUGGCAUUAUCCGGAAUC ...((((((.((((((.((...((((......((((.((((.((..(((((.....)))))..)))))).)))))))).......)))))))).))))))........... (-39.25 = -38.37 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:03 2006