Locus 3502

Sequence ID	2L_DroMel_CAF1
Location	10,239,889 – 10,239,982
Length	93
Max. P	0.999815

overview

Window 9

Location	10,239,889 – 10,239,982
Length	93
Sequences	5
Columns	101
Reading direction	forward
Mean pairwise identity	88.42
Mean single sequence MFE	-27.01
Consensus MFE	-24.50
Energy contribution	-24.60
Covariance contribution	0.10
Combinations/Pair	1.08
Mean z-score	-2.95
Structure conservation index	0.91
SVM decision value	4.15
SVM RNA-class probability	0.999815
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10239889 93 + 22407834
UGUAUGUAGUAGCGGAACAUGUGUACAUAUGUAUAAAAGAGUUAUCUACAUAUGUAGUUG--------CACUCGUGGACUUAUUUACCGCUAAAAAUGUUG
.........((((((.((((((....))))))......((((((.((((....)))).))--------.)))).............))))))......... ( -21.80)
>DroSec_CAF1 4211 101 + 1
UGUAUGUAUUAGCGGAACAUGUGUACAUAUGUAUAAAAGAGUUAUGUACAUAUGUAGUUGCAGAUGUGCACUCGUGGAAAUAUUUACCGUUAAAAGUGUUG
........(((((((.(((((((((((((.............)))))))))))))(((.(((....))))))..............)))))))........ ( -26.02)
>DroSim_CAF1 4639 101 + 1
UGUAUGUAUUAGCGGAACAUGUGUACAUAUGUAUAGAAGAGUUAUGUACAUAUGUAGUUGCAGAUGUGCACUCGUGGAAAUAUUUACCGCUAAAAAUGUUG
........(((((((.(((((((((((((.............)))))))))))))(((.(((....))))))..............)))))))........ ( -28.42)
>DroEre_CAF1 4144 101 + 1
UGUAUGUAUUAGCGGAACCUAUGUACAUAUGUAUAAAAUAGUUAUGUACAUAUGUAGUGGCACAUGUGCACUCGUGGACAUAUUUACCGCUACAAUAUUUG
.((((....((((((...((((.((((((((((((.........))))))))))))))))...((((.((....)).)))).....))))))..))))... ( -27.70)
>DroYak_CAF1 4021 101 + 1
UGUACGUAUUAGCGGAACAUAUGUACAUAUGUAUAAUAGAGCUAUGUACAUAUGUAGUUGCACAUGUGCACUCGUGGAUAUAUUUACCGCUAAAAAAUUUG
........(((((((.(((((((((((((.((........)))))))))))))))(((.(((....))))))..............)))))))........ ( -31.10)
>consensus
UGUAUGUAUUAGCGGAACAUGUGUACAUAUGUAUAAAAGAGUUAUGUACAUAUGUAGUUGCACAUGUGCACUCGUGGAAAUAUUUACCGCUAAAAAUGUUG
.........((((((.(((((((((((((.............)))))))))))))(((.(((....))))))..............))))))......... (-24.50 = -24.60 +   0.10)

alignment

secondary structure

dotplot

Window 0

Location	10,239,889 – 10,239,982
Length	93
Sequences	5
Columns	101
Reading direction	reverse
Mean pairwise identity	88.42
Mean single sequence MFE	-22.20
Consensus MFE	-18.06
Energy contribution	-19.00
Covariance contribution	0.94
Combinations/Pair	1.07
Mean z-score	-3.83
Structure conservation index	0.81
SVM decision value	3.58
SVM RNA-class probability	0.999405
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10239889 93 - 22407834
CAACAUUUUUAGCGGUAAAUAAGUCCACGAGUG--------CAACUACAUAUGUAGAUAACUCUUUUAUACAUAUGUACACAUGUUCCGCUACUACAUACA
.........((((((...........(((.(((--------....((((((((((.............))))))))))))).))).))))))......... ( -18.72)
>DroSec_CAF1 4211 101 - 1
CAACACUUUUAACGGUAAAUAUUUCCACGAGUGCACAUCUGCAACUACAUAUGUACAUAACUCUUUUAUACAUAUGUACACAUGUUCCGCUAAUACAUACA
........(((.(((..............((((((....))).)))((((.((((((((.............)))))))).)))).))).)))........ ( -15.82)
>DroSim_CAF1 4639 101 - 1
CAACAUUUUUAGCGGUAAAUAUUUCCACGAGUGCACAUCUGCAACUACAUAUGUACAUAACUCUUCUAUACAUAUGUACACAUGUUCCGCUAAUACAUACA
........(((((((..............((((((....))).)))((((.((((((((.............)))))))).)))).)))))))........ ( -22.42)
>DroEre_CAF1 4144 101 - 1
CAAAUAUUGUAGCGGUAAAUAUGUCCACGAGUGCACAUGUGCCACUACAUAUGUACAUAACUAUUUUAUACAUAUGUACAUAGGUUCCGCUAAUACAUACA
.........((((((....(((((.....((((((....)).))))(((((((((.............))))))))))))))....))))))......... ( -25.42)
>DroYak_CAF1 4021 101 - 1
CAAAUUUUUUAGCGGUAAAUAUAUCCACGAGUGCACAUGUGCAACUACAUAUGUACAUAGCUCUAUUAUACAUAUGUACAUAUGUUCCGCUAAUACGUACA
........(((((((..............((((((....))).)))(((((((((((((.............))))))))))))).)))))))........ ( -28.62)
>consensus
CAACAUUUUUAGCGGUAAAUAUGUCCACGAGUGCACAUCUGCAACUACAUAUGUACAUAACUCUUUUAUACAUAUGUACACAUGUUCCGCUAAUACAUACA
.........((((((..(((((((.....((((((....))).)))(((((((((.............)))))))))..)))))))))))))......... (-18.06 = -19.00 +   0.94)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:59 2006