Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,235,167 – 10,235,287 |
Length | 120 |
Max. P | 0.793544 |
Location | 10,235,167 – 10,235,287 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.06 |
Mean single sequence MFE | -28.02 |
Consensus MFE | -24.55 |
Energy contribution | -23.83 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.27 |
Mean z-score | -1.72 |
Structure conservation index | 0.88 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10235167 120 + 22407834 AUUUCCAACAGCCAUGUGAUGCCCAUUACGAAACACAGUUUCGUGUUCAUAACGAAUCUGGUUUUGUCCUGAAAGAAUCGCCUUUUCAAAACUGGCUUGUCGCUGUUCAAGCUCUGCAUU ......((((((...........((..(((((((.(((.(((((.......))))).))))))))))..))...((...(((...........)))...))))))))............. ( -28.20) >DroSec_CAF1 7142 120 + 1 AUUUCCAAAAGCCAGGUGAUGCCCAUUACGAAACACAGUUUCGUGUUCAUAACGAAUCUGGUUUUGUCCUGAAAGAAUCGUCUUUUCAGAACUGGCUUGUCGCUGUUCAAGCUCUGCAUC ........(((((((............(((((((.(((.(((((.......))))).)))))))))).((((((((....)).))))))..)))))))...(((.....)))........ ( -34.40) >DroSim_CAF1 7329 120 + 1 AUUUCCAACAGCCAUGUGAUGCCCAUUACGAAACACAGUUUCGUGUUCAUAACGAAUCUGGUUUUGUCCUGAAAGAAUCGUCUUUUCAGUACUGGCUUGUCGCUGUUCAAGCUCUGCAUC .......(((((((.(((.........(((((((.(((.(((((.......))))).)))))))))).((((((((....)).))))))))))))).))).(((.....)))........ ( -31.00) >DroEre_CAF1 7254 120 + 1 AUUUCUAACAGCCAUGUAAUGCCCAUUACAAAACACAAUUUUGUGUUCAUAACAAAUCUGGUUUUGUCCUGAAAAAAUCGCCUCUUCAGCACUGGCUUAUCGCUAUUCAAGCUUUGCAUC .............((((((.((.((..(((((((.((..(((((.......)))))..)))))))))..))........(((...........)))..............)).)))))). ( -22.00) >DroYak_CAF1 8615 120 + 1 AUUUCCAGCAGCCAUGUGAUGCCCAUCACAAAACACAAUUUUGUGUUCAUAACAAAUCUGGUCUUGUCCUGAAAAAAUCGCCUUUUCAGCACUGGCUUAUCGCUGUUUAAGCUCUGCAUC .......(((((((((((((....)))))).((((((....))))))...........)))....((.(((((((.......))))))).)).((((((........))))))))))... ( -28.30) >DroAna_CAF1 7591 120 + 1 AUCUCCAGAAGCCACGUAAUGCCCAUGACAAAACAUAGCUUUGUGUUCAUGACAAAUCUAGUCUUAUCUUGGAAGAAUCGUCUUUUCAAUACGGGCUUAUCGCUGUUUAAGCUUUGCAUU ........(((((.((((.((.(((.((.((.((.(((.(((((.......))))).))))).)).)).)))((((....))))..)).)))))))))...(((.....)))........ ( -24.20) >consensus AUUUCCAACAGCCAUGUGAUGCCCAUUACAAAACACAGUUUCGUGUUCAUAACAAAUCUGGUUUUGUCCUGAAAGAAUCGCCUUUUCAGAACUGGCUUAUCGCUGUUCAAGCUCUGCAUC .................(((((.....(((((((.(((.(((((.......))))).)))))))))).(((((((.......)))))))....((((((........))))))..))))) (-24.55 = -23.83 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:57 2006