Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,074,279 – 1,074,378 |
Length | 99 |
Max. P | 0.724584 |
Location | 1,074,279 – 1,074,378 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 90.91 |
Mean single sequence MFE | -30.94 |
Consensus MFE | -22.96 |
Energy contribution | -23.16 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.74 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1074279 99 - 22407834 AGAGUAGGAGCGAAAAGAAACUAAUAGGCCAGUAGUACGAAUCGCAGAGGAGUGAGCAGUGCAGUGGCAAUUUUGCAUCGAUCUCCCACUCAAUGGGCA .((((.(((((((...((((.......((((.(.((((...((((......))))...))))).))))..))))...)))..)))).))))........ ( -28.70) >DroSec_CAF1 56596 99 - 1 AGAGUAGGAGCGAGAGGAAGGUAAUAGACCAGUAGUACGAAUCGCUGAGGAGUGAGCAGUGCAGUGGCAAUUUUGCAUCGAUCUCCCACUCAAUGGGCA .((((.((((...((.....((((....(((.(.((((...(((((....)))))...))))).))).....)))).))...)))).))))........ ( -28.60) >DroSim_CAF1 48395 99 - 1 AGAGUAGGAGCGAGAGGAAAGUAAUAGACCAGUAGUACGAAUCGCUGAGGAGUGAGCAGUGCAGUGGCAAUUUUGCAUCGAUCUCCCACUCAAUGGGCA .((((.(((((((..(.(((((....(.(((.(.((((...(((((....)))))...))))).)))).))))).).)))..)))).))))........ ( -28.70) >DroEre_CAF1 53737 99 - 1 AGAGUGGGAGCGAGACGAAGCCAAUAGAGAAGUAGUACGAUUCGCCGAGGAGUGAGGAGUGCGGUGGCAAUUUUGCAUCGAUCUCCCACUCAACGGGCA .((((((((((((..((((((((...........((((..(((((......)))))..))))..))))...))))..)))..)))))))))........ ( -36.02) >DroYak_CAF1 56633 99 - 1 CGAGUCGAAGCGAGACGAAACUAAUAGAGAAGUAGUACGAUUCGCUGAGGAGUGAGGAGUGCGGUGGCAAUUUUGCAUCGAUCUCCCACUCAACGGGCA ...(((..((((((.((..((((.........)))).)).))))))...(((((.((((..(((((.((....)))))))..)))))))))....))). ( -32.70) >consensus AGAGUAGGAGCGAGACGAAACUAAUAGACCAGUAGUACGAAUCGCUGAGGAGUGAGCAGUGCAGUGGCAAUUUUGCAUCGAUCUCCCACUCAAUGGGCA .((((.(((((((.....................((((...((((......))))...))))....(((....))).)))..)))).))))........ (-22.96 = -23.16 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:40 2006