Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,210,234 – 10,210,334 |
Length | 100 |
Max. P | 0.519276 |
Location | 10,210,234 – 10,210,334 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.73 |
Mean single sequence MFE | -31.40 |
Consensus MFE | -23.47 |
Energy contribution | -22.95 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.32 |
Mean z-score | -1.38 |
Structure conservation index | 0.75 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10210234 100 + 22407834 UUGCUGCACGAUAGCUGGGGUUCCACUUGAAAUGGUGGAUAGAUUGGAACGUCCGAUUUUCUCGCCACUUUCUACGAACUCAGCGAUGGCGUUGCGGAAU ...(((((((...((((((.(((.....((((((((((..(((((((.....)))))))..)))))).))))...))))))))).....)).)))))... ( -36.30) >DroSec_CAF1 3387 100 + 1 UUGCUGCACGAUAGCUGGUGUUCCACUUGAAAUGGUGGAUAGAUUGGAGCGUCCGAUUUUCUCGCCACUUUCUACGAACUGAGCGAUGGCGUUGCGGAAU ...(((((((...(((.(.((((.....((((((((((..(((((((.....)))))))..)))))).))))...))))).))).....)).)))))... ( -33.10) >DroSim_CAF1 3117 100 + 1 UUGCUGCACGAUAGCUGGUGUUCCACUUGAAAUGGUGGAUAGAUUGGAACGUCCGAUUUUCUCGCCACUUUCUACGAACUGAGCGAUGGCGUUGCGGAAU ...(((((((...(((.(.((((.....((((((((((..(((((((.....)))))))..)))))).))))...))))).))).....)).)))))... ( -33.10) >DroEre_CAF1 3343 100 + 1 UUGUUGCACUACAGCCGGAGUUCCAGUUGAGAUGGUGGAUAGGUUGGAACGUCCAAUUUUCUCGCCGCUUUCCACAAACCGAGCGAUAUCAUUGCGGAAU ..((((.....))))....(((((.((.((((((((((..(((((((.....)))))))..)))))).)))).)).......(((((...)))))))))) ( -28.10) >DroYak_CAF1 3155 100 + 1 UUGCUGCACUACAGCCGGAGUUCCAGUUGAAAUGGUGGAUAAGUUGGAACGUCCAAUUUUUUCGCCGCUUUCUACGAACCGAGCAAUAUCAUUGCGGAAU ..((((.....))))....(((((.((.(((((((((((.(((((((.....))))))).))))))).)))).)).......(((((...)))))))))) ( -32.70) >DroAna_CAF1 3445 100 + 1 UUGUUGGGCUGGGGGAAGUGUUCCCGUGGAAAUCGUCGACAAAUUGGACCGUCCGAUUUUUUCCCCACUCUCCACAAAUUGUGCUAUAACGUUUCGGAAU .....(((.(((((((((((((..(((....).))..))))((((((.....))))))))))))))))))(((......(((......)))....))).. ( -25.10) >consensus UUGCUGCACGAUAGCUGGUGUUCCACUUGAAAUGGUGGAUAGAUUGGAACGUCCGAUUUUCUCGCCACUUUCUACGAACUGAGCGAUAGCGUUGCGGAAU ..((((.....))))....(((((....((((((((((..(((((((.....)))))))..)))))).))))..........(((((...)))))))))) (-23.47 = -22.95 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:53 2006