Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,206,664 – 10,206,769 |
Length | 105 |
Max. P | 0.788894 |
Location | 10,206,664 – 10,206,769 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -42.84 |
Consensus MFE | -24.07 |
Energy contribution | -22.77 |
Covariance contribution | -1.30 |
Combinations/Pair | 1.44 |
Mean z-score | -1.97 |
Structure conservation index | 0.56 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10206664 105 + 22407834 CGGCAGGGGGACGCCCACACAGUGCCUGCGCAGCUGGUCGUUCAGCGAGUGCAGCUGUUUGUAGCGCAGGACGCAGUGGUGGAUGCCGUUGAUGUGUAUGUUGUA (((((.(....)..((((((.((((((((((.(((((....)))))...(((((....)))))))))))).))).)).)))).)))))................. ( -43.00) >DroVir_CAF1 221780 105 + 1 UGGCAGGGCGGCGUCUGUGCAACGCCUACGCAGCUGUUCGUGCAGUGCGUGCAGCUGCUUGUAGCGCAGGCAGCAGUGAUAGUUGCCAUUGAUAUAGAUGUUGUA .......(((((((((((((((.((((((((((((((.(((.....))).))))))))..)))).)).((((((.......)))))).))).)))))))))))). ( -49.30) >DroGri_CAF1 197240 105 + 1 GGGCAGGGCGGCGUCUGUGCAACGGCUGCGCAGCUGUUCGUGCAACGCGUGCAGCUGCUUGUACCGCAGGCAGCAAUGAUAGUUGCCAUUUAUAUAAAUGUUGUA .(((((.(((((((.((..((((((((....))))))).)..)))))).))).((((((((.....))))))))........))))).................. ( -44.20) >DroYak_CAF1 122898 105 + 1 CGGCAGGGGGACACCCACACAGUGCCUGCGCAGCUGCUCGUUCAGCGAGUGCAGCUGUUUGUAGCGCAGGACGCAGUGGUGGAUGCCGUUGAUGUGUAUGUUGUA ((((((((.....))).(((.(((((((((((((((((((.....)))..)))))).......))))))).))).))).....)))))................. ( -44.41) >DroMoj_CAF1 277126 105 + 1 CGGCAAGGCGGCGUCCGCGCAACGCCUACGCAGCUGUUCGUGCAACGCGUGCAGCUGCUUGUAGCGCAAGCAGCAAUGAUAGUUACCAUUAAUGUAGAUAUUGUA .....((((((((....)))..)))))..((((((((.((((...)))).)))))))).(((.((....)).)))(..(((.((((.......)))).)))..). ( -39.70) >DroAna_CAF1 133584 105 + 1 GGGAAGGCUCACGCCCACGCAGUGCCUGCGCAACUGCUCGUUCAGGGAGUGUAACUGUUUGUAGCGCAGGCAGCAGUGGUAGGCGCCGUUGAUGUGUAUGUUGUA .....(((.(.(..((((((..(((((((((.(((.(((.....))))))...((.....)).))))))))))).))))..)).))).................. ( -36.40) >consensus CGGCAGGGCGACGCCCACGCAACGCCUGCGCAGCUGUUCGUGCAGCGAGUGCAGCUGCUUGUAGCGCAGGCAGCAGUGAUAGUUGCCAUUGAUGUAUAUGUUGUA .......((((((..((((....((((((((((((((...(((...))).))))))))..)))).))......(((((........))))).))))..)))))). (-24.07 = -22.77 + -1.30)
Location | 10,206,664 – 10,206,769 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -34.79 |
Consensus MFE | -20.00 |
Energy contribution | -19.25 |
Covariance contribution | -0.74 |
Combinations/Pair | 1.43 |
Mean z-score | -2.05 |
Structure conservation index | 0.57 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10206664 105 - 22407834 UACAACAUACACAUCAACGGCAUCCACCACUGCGUCCUGCGCUACAAACAGCUGCACUCGCUGAACGACCAGCUGCGCAGGCACUGUGUGGGCGUCCCCCUGCCG .................((((((((((.((.(.(.(((((((.......(((((...(((.....))).))))))))))))).).)))))))........))))) ( -33.41) >DroVir_CAF1 221780 105 - 1 UACAACAUCUAUAUCAAUGGCAACUAUCACUGCUGCCUGCGCUACAAGCAGCUGCACGCACUGCACGAACAGCUGCGUAGGCGUUGCACAGACGCCGCCCUGCCA .................(((((.........(((((.((.....)).))))).((((((((((......))).))))).((((((.....))))))))..))))) ( -35.40) >DroGri_CAF1 197240 105 - 1 UACAACAUUUAUAUAAAUGGCAACUAUCAUUGCUGCCUGCGGUACAAGCAGCUGCACGCGUUGCACGAACAGCUGCGCAGCCGUUGCACAGACGCCGCCCUGCCC .....(((((....)))))((((......)))).((..(((((....(((((((....((.....))..)))))))((((...))))......)))))...)).. ( -29.20) >DroYak_CAF1 122898 105 - 1 UACAACAUACACAUCAACGGCAUCCACCACUGCGUCCUGCGCUACAAACAGCUGCACUCGCUGAACGAGCAGCUGCGCAGGCACUGUGUGGGUGUCCCCCUGCCG ..................(((((((((.((.(.(.(((((((.......((((((..(((.....))))))))))))))))).).)))))))))))......... ( -39.51) >DroMoj_CAF1 277126 105 - 1 UACAAUAUCUACAUUAAUGGUAACUAUCAUUGCUGCUUGCGCUACAAGCAGCUGCACGCGUUGCACGAACAGCUGCGUAGGCGUUGCGCGGACGCCGCCUUGCCG ..................(((((........((((((((.....)))))))).((((((((((......)))).)))).((((((.....)))))))).))))). ( -36.50) >DroAna_CAF1 133584 105 - 1 UACAACAUACACAUCAACGGCGCCUACCACUGCUGCCUGCGCUACAAACAGUUACACUCCCUGAACGAGCAGUUGCGCAGGCACUGCGUGGGCGUGAGCCUUCCC ...................((((((((((....(((((((((.((.....(((.((.....))))).....)).))))))))).)).)))))))).......... ( -34.70) >consensus UACAACAUACACAUCAACGGCAACUACCACUGCUGCCUGCGCUACAAACAGCUGCACGCGCUGAACGAACAGCUGCGCAGGCACUGCGCGGACGCCGCCCUGCCG ..................((((....((..(((((((((((.......((((((...............))))))))))))))..)))..))........)))). (-20.00 = -19.25 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:50 2006