Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,204,559 – 10,204,655 |
Length | 96 |
Max. P | 0.778200 |
Location | 10,204,559 – 10,204,655 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 73.05 |
Mean single sequence MFE | -17.04 |
Consensus MFE | -4.24 |
Energy contribution | -6.40 |
Covariance contribution | 2.16 |
Combinations/Pair | 1.33 |
Mean z-score | -1.79 |
Structure conservation index | 0.25 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10204559 96 - 22407834 UCAU-UGUUCAUAGUGAAAGGGA---A-----CACAAAAGUGGCAUUUAAAAGUUAUUGUUGCGGAAUAAAAUAAUUAUAUCGUAUUAAUAACGUUUAAAUCAUA ((((-((....))))))......---.-----(((....)))(.(((((((.(((((((.(((((.((((.....)))).))))).))))))).))))))))... ( -19.10) >DroSec_CAF1 118236 86 - 1 UAAU-UGUUAAUAGUGAAAGGGAA--A-----CACAAAAGUUGCA-----------UUGUUGCGGAGUAAAAUAAUUAUAUAGCAUUAAUAACGUUUAAAUCAUA (((.-(((((.(((((....(...--.-----).......(((((-----------....)))))..................))))).))))).)))....... ( -11.90) >DroSim_CAF1 124990 104 - 1 UAAU-UGUUAAUAGUGAAAGGGUGAAAUAGUGCACAAAAGUUGCAUUUAAAUGUUAUUGUUGCGGAGUAAAAUAAUUAUAUAGCAUUAAUAACGUUUAAAUCAUA ....-........(..(....(((........))).....)..)(((((((((((((((.(((...((((.....))))...))).))))))))))))))).... ( -21.00) >DroEre_CAF1 120236 97 - 1 UAAU-UUCGGAUAGUAAAAAAGGA--A-----GACAAAAUAUGCAUUUAAAAGUUAUUAACGCGGAGUAAAAUAAUUAUUUCGCAUAAAUAGCGUUUAAAUAAGG ....-...................--.-----............(((((((.((((((...(((((((((.....)))))))))...)))))).))))))).... ( -16.60) >DroYak_CAF1 120866 98 - 1 UAAUGCUUGGAUUGUAAAUUGGAA--G-----CACAAAAAAUGCAUUUAGGUGUUUUUAAAGCAGAAUAAAAUAAUUAUUUCACAUUAAUAGCAUUUAAGCCAGA ....((((((((.((...((((((--(-----(((..(((.....)))..)))))))))).(..((((((.....))))))..).......)))))))))).... ( -16.60) >consensus UAAU_UGUUAAUAGUGAAAGGGAA__A_____CACAAAAGUUGCAUUUAAAAGUUAUUGUUGCGGAGUAAAAUAAUUAUAUCGCAUUAAUAACGUUUAAAUCAUA ............................................(((((((.(((((((.(((...((((.....))))...))).))))))).))))))).... ( -4.24 = -6.40 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:48 2006