Locus 3494

Sequence ID 2L_DroMel_CAF1
Location 10,196,747 – 10,196,849
Length 102
Max. P 0.561361
window5518

overview

Window 8

Location 10,196,747 – 10,196,849
Length 102
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 76.85
Mean single sequence MFE -35.27
Consensus MFE -22.16
Energy contribution -23.58
Covariance contribution 1.42
Combinations/Pair 1.29
Mean z-score -1.29
Structure conservation index 0.63
SVM decision value 0.06
SVM RNA-class probability 0.561361
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10196747 102 - 22407834
CCUGGAGCUGCAGACGUGCCUGGUGGCCAUGUCUGCCAUGUGCAUGGUGUCCCUGGCAAUGCUGGACGGAUUAACUGUGUACAAAGAAGUGAGCAU-------------UUAUUG
......((((((((((((((....)).)))))))))..(((((((((((((((..((...))..)..))))..))))))))))........)))..-------------...... ( -38.90)
>DroSec_CAF1 110394 102 - 1
CCUGGAGCUGCAGACGUGCCUGGUGGCCAUGUCUGCCAUGUGCAUGGUGUUCCUGGCCAUGCUGGACGGAUUAACUGUGUAUAAAGAAGUGAGCAU-------------UUAUUA
......((((((((((((((....)).)))))))))..((((((((((..(((...((.....))..)))...))))))))))........)))..-------------...... ( -36.70)
>DroSim_CAF1 117088 102 - 1
CCUGGAGCUGCAGACGUGCCUGGUGGCCAUGUCUGCCAUGUGCAUGGUGUCCCUGGCCAUGCUGGACGGAUUAACUGUGUACAAAGAAGUGAGCAU-------------UUAUUA
......((((((((((((((....)).)))))))))..(((((((((((((((..((...))..)..))))..))))))))))........)))..-------------...... ( -38.90)
>DroEre_CAF1 112053 115 - 1
CCUGGAGCUCCAGACGUGCCUGGUGACCAUAUCUGCCAUGUGCAUGGGGUCCUUGGCAUUGCUGGACGGACUUACGGUGUACAAAGAGGUAAGCGUUGCGUUGUUUCAUUUAUUC
..((((((..(.(((((((((((((........)))).(((((((.(((((((..((...))..)..)))))..).)))))))...))))..)))))..)..))))))....... ( -34.80)
>DroYak_CAF1 112349 108 - 1
UCUGGAGCUGCAGACGUGCCUGGUGGCCAUGUCUGCCAUGUGCAUGGUAUCCUUGGCACUUCUGGACGGAUUUACGGUGUACAAAGAAGUAAGCAUUGUU-------AUUUAUUA
......((((((((((((((....)).)))))))))..(((((((.(((((((..(.....)..)..)))..))).)))))))........)))......-------........ ( -33.90)
>DroMoj_CAF1 255512 107 - 1
CCUUGAGCUGGAGACCUGCCUGCUCAGCGUAACGGUGAUUUGUCUAUUGGUCUUGGCUGCACUGGAUGGAUAUACCAUUUAUAAAGAGGUGAGUAC--------GCCAUUUACAU
..((((((.((.......)).)))))).((((.(((((((..(((...(((....)))....(((((((.....))))))).....)))..))).)--------)))..)))).. ( -28.40)
>consensus
CCUGGAGCUGCAGACGUGCCUGGUGGCCAUGUCUGCCAUGUGCAUGGUGUCCCUGGCAAUGCUGGACGGAUUAACUGUGUACAAAGAAGUGAGCAU_____________UUAUUA
......((((((((((((((....)).)))))))))..((((((..(((((((..(.....)..)..))))..))..))))))........)))..................... (-22.16 = -23.58 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:47 2006