Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,196,412 – 10,196,502 |
Length | 90 |
Max. P | 0.652564 |
Location | 10,196,412 – 10,196,502 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 93.11 |
Mean single sequence MFE | -20.28 |
Consensus MFE | -15.22 |
Energy contribution | -16.90 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.04 |
Mean z-score | -1.93 |
Structure conservation index | 0.75 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10196412 90 - 22407834 AUGUGUUUAUUUCAAUGGCCAAAACGUAUUUAUUUAAAUGCUGCGCUAAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAAAAAUCGCUA ...............((((......((((((....))))))(((((((((........))))))))).........)))).......... ( -20.60) >DroSec_CAF1 110017 90 - 1 AUGUGUUUAUUUCAAUGGCCAAAACGUAUUUAUUUAAAUGCUGCGCUAAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAAAAAUCGCAA .((((...((((...((((......((((((....))))))(((((((((........))))))))).........)))).)))))))). ( -21.70) >DroSim_CAF1 116670 90 - 1 AUGUGUUUAUUUAAAUGGCCAAAACGUAUUUAUUUAAAUGCUGCGCUAAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAAAAAUCGCAA .((((...((((...((((......((((((....))))))(((((((((........))))))))).........)))).)))))))). ( -21.70) >DroEre_CAF1 111740 90 - 1 AUGUGAUUAUUUCAAUGGCCAAAACGAAUUGAUUCAAAUGCUCCGCUUAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAGAAAUAGCAA ...((.(((((((..((((......(((....)))...(((.((((((........))).))).))).........))))))))))))). ( -17.60) >DroYak_CAF1 112027 90 - 1 AUGUGAUUAUUUCAAUGGCUAAAACGUAUUUAUUUAAAAACCCCGCUAAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAGAAAUCGCAA .(((((((...((..(((((.....(((((((((.............)))))))))..((((...))))......)))))))))))))). ( -19.82) >consensus AUGUGUUUAUUUCAAUGGCCAAAACGUAUUUAUUUAAAUGCUGCGCUAAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAAAAAUCGCAA .((((...((((...((((......((((((....))))))(((((((((........))))))))).........)))).)))))))). (-15.22 = -16.90 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:46 2006