Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,194,920 – 10,195,016 |
Length | 96 |
Max. P | 0.550825 |
Location | 10,194,920 – 10,195,016 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 75.61 |
Mean single sequence MFE | -26.12 |
Consensus MFE | -15.19 |
Energy contribution | -16.13 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.35 |
Mean z-score | -1.43 |
Structure conservation index | 0.58 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10194920 96 + 22407834 AUGUUCCGAGUGUCCUCCGUCAUGUGGUUGGUGAUGCUGCCAAUGUCAUGGCUGAUAUUUGGUUCUGGUUAGGAAUGGAAA--AAAG--GAUUAUAUUAC-- ........(((((..(((((((((..((((((......))))))..)))))).....(((.(((((.....))))).))).--...)--))..)))))..-- ( -25.80) >DroVir_CAF1 193633 89 + 1 AUAUUGAGAGUGUCCUCCGUCAUGUGAUUCGUGAUUGCGCCAAUGUCACUG---AGGCCUG-UGCGGAG-AAGUCAAAA------UA--GAUUAGAAUUCAU .......((((.((((((((((((.....)))))).((((....(((....---.)))..)-)))))))-.((((....------..--)))).)))))).. ( -20.20) >DroSec_CAF1 108563 97 + 1 AUGUUCCGUGUGUCCUCGGUCAUGUGGUUGGUGAUGCUGCCAAUGUCAUGGCUGAUAUUUGGUUCUGAA-AAGUAUAAAAAUAAAAA--GAUUAUAAUAC-- ..(..(((.(((((...(((((((..((((((......))))))..)))))))))))).)))..)....-.................--...........-- ( -22.60) >DroSim_CAF1 115168 96 + 1 AUGUUGCGGGUGUCCUCGGUCAUGUGGUUGGUUAUGCUGCCAAUGUCAUGGCUGAUAUUUGGUUCUGAA-AGGUAUGUAAA-AAACA--UAUAAUAAUAC-- .(((((((((...(((((((((((..((((((......))))))..))))))))).....)).))))..-..((((((...-..)))--)))..))))).-- ( -26.30) >DroEre_CAF1 110240 95 + 1 AUGUUCAGGGUGUCCUCGGUCAUGUGGUUGGUGAUGCUGCCAAUGUCGUGGCUGACAUUUGGUUCUGAA-AAGUAUCGAAA--AGAG--GUUAAUUAUGC-- .....((..((..(((((((((((..((((((......))))))..)))))))....((((((.((...-.)).)))))).--.)))--)...))..)).-- ( -28.30) >DroYak_CAF1 110494 97 + 1 AUGUUCAGGGUGUCCUCGGUCAUGUGGUUGGUGAUGCUGCCAAUGUCAUGGCCCACAUUUGGUUCUGAA-AAGUGUGGAGA--AGAGGAGUUAAUUCUAU-- ......(((((.((((((((((((..((((((......))))))..)))))))(((((((.........-)))))))....--.)))))....)))))..-- ( -33.50) >consensus AUGUUCAGGGUGUCCUCGGUCAUGUGGUUGGUGAUGCUGCCAAUGUCAUGGCUGAUAUUUGGUUCUGAA_AAGUAUGGAAA__AAAA__GAUAAUAAUAC__ .......(((((((...(((((((..((((((......))))))..)))))))))))))).......................................... (-15.19 = -16.13 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:45 2006