Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,193,182 – 10,193,289 |
Length | 107 |
Max. P | 0.749880 |
Location | 10,193,182 – 10,193,289 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 75.57 |
Mean single sequence MFE | -27.60 |
Consensus MFE | -17.88 |
Energy contribution | -18.63 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.23 |
Mean z-score | -1.35 |
Structure conservation index | 0.65 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10193182 107 - 22407834 UGGCAAGACAUCCUUGCUAUCGGCGCUUCUCAUGGAGAUGCCGCUCCUAGCAGGCAACAUGUUUUGGCAUAAGUGAGUAAACAUCUUAUAGUCUUCGGUUUUUUUUU ((.((((((((.(((((((.(((((((((....)))).)))))....)))))))....)))))))).))...(((((.......))))).................. ( -30.60) >DroVir_CAF1 189537 86 - 1 UGGCAAGACCUCCCUGCUAUCGGCUCUGCUCAUGGAGAUGCCACUGCUUGUGGGGAAUAUGUUUUGGCAUAAGUGAGUACAAGUUU--------------------- ((.((((((.((((..(....((((((.(....).))).))).......)..))))....)))))).)).................--------------------- ( -24.30) >DroSec_CAF1 106855 92 - 1 UGGCAAGACAUCCUUGCUAUCGGCGCUCCUCAUGGAGAUGCCGCUCCUCGCAGGCAACAUGUUUUGGCAUAAGUGAGUAAACAUCAUCUAAU--------------- ((.((((((((..(((((...((((((((....)))).))))((.....)).))))).)))))))).))((..(((.......)))..))..--------------- ( -30.60) >DroEre_CAF1 108478 102 - 1 UGGCAAGACUUCCCUUCUAUCGGCGCUCCUCAUGGAGAUGCCGCUUCUCGCAGGCAACAUGUUUUGGCACAAGUGAGUGAACUGCUUAUAAUCUUCGCUCUU----- ((.((((((............((((((((....)))).))))((((.....)))).....)))))).)).....(((((((............)))))))..----- ( -29.90) >DroYak_CAF1 108710 102 - 1 UGGCAAGACAUCCCUUCUAUCGGCGCUCCUCAUGGAGAUGCCGCUCCUCGCAGGCAACAUGUUUUGGCACAAGUGAGUAAACUUCUUACAGUCUUCGGUUUU----- ((.((((((((.(((......((((((((....)))).))))((.....)))))....)))))))).))...(((((.......))))).............----- ( -29.50) >DroAna_CAF1 117892 89 - 1 UGGAAAGACCUCUCUGCUGUCUGCUCUUCUCAUGGAGAUGCCUCUAUUGGCAGGCAAUAUGUUUUGGCACAAGUAAGUAGU-AUUUUAGG----------------- ........(((...(((((..((((((((....)))))((((......))))(.(((......))).)....)))..))))-)....)))----------------- ( -20.70) >consensus UGGCAAGACAUCCCUGCUAUCGGCGCUCCUCAUGGAGAUGCCGCUCCUCGCAGGCAACAUGUUUUGGCACAAGUGAGUAAACAUCUUAUA_U_______________ ((.((((((...(((((...(((((((((....)))).)))))......)))))......)))))).))...................................... (-17.88 = -18.63 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:42 2006