Locus 349

Sequence ID 2L_DroMel_CAF1
Location 1,074,006 – 1,074,106
Length 100
Max. P 0.800214
window553

overview

Window 3

Location 1,074,006 – 1,074,106
Length 100
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 95.66
Mean single sequence MFE -24.08
Consensus MFE -22.06
Energy contribution -21.90
Covariance contribution -0.16
Combinations/Pair 1.11
Mean z-score -1.29
Structure conservation index 0.92
SVM decision value 0.61
SVM RNA-class probability 0.800214
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1074006 100 + 22407834
UUCAUUCACAGAACAGUGAAAUUGGGUGUCAUUUU--GGGAUCGAUUCAGAUUUCAGAUAUCUGCUGGUGUGGAUGAAUCAAUUAAAUGGCAAAAGAGCGAG
((((((((((...((((......(((((((....(--(..(((......)))..))))))))))))).))))))))))...........((......))... ( -27.60)
>DroSec_CAF1 56322 102 + 1
UUCAUUCACAGAGCAGUGAAAUUGGGUGUCAUUUUUGGGGAUCGAUUCAGAUUUCAGAUAUCUGCUGGUGUGGAUGAAUCAAUUAAAUGGCAAAAGAACGAG
(((.(((((......)))))......((((((((((((..(((......)))..)...((((..(....)..))))...)))..))))))))...))).... ( -23.90)
>DroSim_CAF1 48136 101 + 1
UUCAUUCACAGAGCAGUGAAAUUGGGUGUCAUUUUUGGGGAUCGAUUCAGAUUUCAGAUAUCUGCUGGUGUGGAUGAAUCAAUUAAAUGGCAA-AGAACGAG
(((.(((((......)))))......((((((((((((..(((......)))..)...((((..(....)..))))...)))..)))))))).-.))).... ( -23.90)
>DroEre_CAF1 53465 100 + 1
UUCAUUCACAGAGCAAUGAAAUUGGGUGUCGUUUU--GGGAUCGAUUCAGAUUUCAGAUAUCUGCUGGUGUAGAUGAAUCAAUUAAAUGGCAAAAGAACGAG
((((((........)))))).((...(((((((((--(..(((......)))..))..(((((((....)))))))........))))))))...))..... ( -22.30)
>DroYak_CAF1 56360 100 + 1
UUCAUUCACAUAGCAAUGAAAUUGGGUGUCAUUUU--GGGAUCGAUUCAGAUUUCAGAUAUCUGCUGGUGUAGAUGAAUCAAUUAAAUGGCAAAAGAACGAG
((((((........)))))).((...(((((((((--(..(((......)))..))..(((((((....)))))))........))))))))...))..... ( -22.70)
>consensus
UUCAUUCACAGAGCAGUGAAAUUGGGUGUCAUUUU__GGGAUCGAUUCAGAUUUCAGAUAUCUGCUGGUGUGGAUGAAUCAAUUAAAUGGCAAAAGAACGAG
(((.(((((......)))))......((((((((...(..(((......)))..)...(((((((....)))))))........))))))))...))).... (-22.06 = -21.90 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:39 2006