Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,191,635 – 10,191,755 |
Length | 120 |
Max. P | 0.627519 |
Location | 10,191,635 – 10,191,755 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.72 |
Mean single sequence MFE | -38.58 |
Consensus MFE | -19.66 |
Energy contribution | -20.00 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.60 |
Mean z-score | -1.82 |
Structure conservation index | 0.51 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10191635 120 + 22407834 AUAGCUCGAGCUAUGGCAAUUCGCUGCCUUUGUCCACCGGAGAUAUUAAUUCCGCGUUCCCCGAUAAUGGAAAGAUCCCCUCGGGGCAUUAGCUCAAUAUCCGGUUUCAGAGCACAGGCU ...(((((..(...((((......))))...)..)((((((((.......)).((...((((((....(((....)))..)))))).....))......))))))....))))....... ( -36.60) >DroVir_CAF1 184358 120 + 1 AUUGCACGUGCAAUAGCGAUGCGCUGCCUCUGUCCGCCGGAUAGGUUGAUGCCGCGCUCACCGAUUAUCGUAAAAUCGCCGCUCGGCAUUAGUUCAAUAUCCGGCUUUAGUGCACACGCA (((((....))))).(((.((((((((....))..((((((((..(((((((((.((....(((((.......)))))..)).))))))))).....))))))))...))))))..))). ( -45.20) >DroGri_CAF1 159318 120 + 1 AUUGCACGUGCUAUCGCAAUCCGUUGCCGCUGUCCGCCUGACAGAUUGAUGCCUCGCUCACCGAUUAUCGUAAAAUCGGCUGUGGGCAUCAGUUCAAUAUCCGGUCUCAAUGCGCACGCA ......(((((....(((....(..(((((((((.....)))))(((((((((.(((...((((((.......))))))..))))))))))))........))))..)..)))))))).. ( -40.90) >DroWil_CAF1 192035 120 + 1 AUUGCACGAGCUAUGGCAAUUCGUUGCCUUUGACCACCGGACAAAUUGAUGCCACGCUCACCGAUAAUGGUAAAAUCGCCAGUUGGCAUUAAUUCAAUAUCUGGCUUCAAUGCACAUGCA ..((((.(.((...(((((....))))).((((...(((((..(((((((((((.(((...((((.........))))..)))))))))))))).....)))))..)))).)).).)))) ( -34.10) >DroAna_CAF1 116333 120 + 1 AAGGCCCGGGCAAUGGCGAUUCGUUGCCUUUGUCCCCCUGACAUGUUGAUUCCUCGUUCUCCGAUAAUCGUAUAAUCUCCGCGCGGCAUUAGCUCGAUGUCCAGCUUGAGGGCACAGGCU ...((((((((((.(((((....))))).))))))..(((((((((((((.((.(((.....(((.........)))...))).)).))))))...)))).))).....))))....... ( -36.10) >DroPer_CAF1 88528 120 + 1 AUCGCACGCGCAAUAGCAAUUCGCUGUAUCUGUCCGCCUGAUAUAUUGAUGCCGCGCUCUCCGAUAAUGGUGAAAUCGCCUUUUGGCAUUAUUUCAAUGUCAGGCUUAAGGGCACAUGCU .........((((((((.....)))))...((((((((((((((..(((((((.((.....)).....((((....))))....))))))).....)))))))))....)))))..))). ( -38.60) >consensus AUUGCACGAGCAAUGGCAAUUCGCUGCCUCUGUCCGCCGGACAUAUUGAUGCCGCGCUCACCGAUAAUCGUAAAAUCGCCUCUCGGCAUUAGUUCAAUAUCCGGCUUCAGUGCACACGCA ..((((.(.((....(((......)))........((((((...((((((((((.......((((.........)))).....))))))))))......))))))......)).).)))) (-19.66 = -20.00 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:41 2006