Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,190,250 – 10,190,369 |
Length | 119 |
Max. P | 0.542332 |
Location | 10,190,250 – 10,190,369 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.17 |
Mean single sequence MFE | -42.48 |
Consensus MFE | -27.30 |
Energy contribution | -26.97 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.32 |
Mean z-score | -1.50 |
Structure conservation index | 0.64 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10190250 119 + 22407834 AACCACCCAUGG-AGACGGCCACAUGGUUGCCCAUCACCUGGGCACAGAUCAUGGACAUGGCCUCGCAUUGCGUGGGAUUCACUUUGCCGGGCAUUAUGGAACUACCUGGUUCGUUCUCC ..........((-(((((((((((((((((((((.....))))))...))))))....)))))...((((((.(((.(.......).))).)))..)))(((((....)))))).))))) ( -40.50) >DroPse_CAF1 96203 119 + 1 AACCGCCUAAUG-UAACCGCUACUUGGUUGCCCAUGACCUGGGCACAGAUCAUGGUGAGAGCUUCGCACUGUGUCGGAUUGACUUUACCAGGCAUAAUCGAGCUACCCGGCUCAUUUUCG ....((((...(-((((((.....)))))))......((..(((((((.....(((....))).....)))))))))............))))......(((((....)))))....... ( -34.50) >DroSim_CAF1 111094 120 + 1 AACCACCCAUGGCAGACGGCCACAUGGUUGCCCAUCACCUGGGCGCAGAUCAUGGACAUGGCCUCACAUUGCGUGGGAUUUACUUUGCCGGGCAUGAUGGAACUACCUGGUUCGUUCUCC .....(((..((((((.(((((((((((((((((.....)))))...)))))))....)))))((((.....)))).......)))))))))...((..(((((....)))))..))... ( -39.50) >DroYak_CAF1 105442 119 + 1 AACCACCCAUGG-UGACGGCCACAUGGUUGCCCAUCACCUGGGCGCAGAUCAUGGACAUGGCCUCGCACUGCGUGGGAUUCACCUUGCCGGGCAUGAUUGAACUGCCUGGCUCGUUCUCC .....(((((((-(((.(((((((((((((((((.....)))))...)))))))....)))))))))....)))))).........((((((((.(......)))))))))......... ( -48.90) >DroAna_CAF1 114825 119 + 1 CGCCGCCAAUGC-UAAUGGCUGCAUCAUUGCCCAUGAUCUGGGCACAGAUCAUGGUCAUGGCCUCGCACUGGGUGGGAUUCACCUUCCCCGGCAUGAUCGAGCUGCCCGGCUCGUUCUCU .(((((((.(((-....(((((((....)))((((((((((....))))))))))....))))..))).)))..((((.......))))))))..((.((((((....)))))).))... ( -54.00) >DroPer_CAF1 86866 119 + 1 AACCGCCUAAUG-UAACCGCUACUUGGUUGCCCAUGACCUGGGCACAGAUCAUGGUGAGAGCUUCGCACUGUGUCGGAUUCACUUUGCCUGGCAUAAUCGAGCUUCCCGGCUCAUUUUCG ....(((....(-((((((.....)))))))((((((.(((....))).)))))).(..((((.((...((((((((...........))))))))..))))))..).)))......... ( -37.50) >consensus AACCACCCAUGG_UAACGGCCACAUGGUUGCCCAUCACCUGGGCACAGAUCAUGGACAUGGCCUCGCACUGCGUGGGAUUCACUUUGCCGGGCAUGAUCGAACUACCCGGCUCGUUCUCC .................((((.((((((((((((.....))))))...)))))).....))))..((...(((.((......)).)))...))......(((((....)))))....... (-27.30 = -26.97 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:40 2006