Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,190,091 – 10,190,210 |
Length | 119 |
Max. P | 0.512230 |
Location | 10,190,091 – 10,190,210 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 78.49 |
Mean single sequence MFE | -38.45 |
Consensus MFE | -24.79 |
Energy contribution | -25.97 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.31 |
Mean z-score | -1.24 |
Structure conservation index | 0.64 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512230 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10190091 119 - 22407834 UGCCUCCAAUGUUUUGCGCUCGAUUACACUUUUGGGCGAUGGCAUGAAGUCCUUUUGCACCAAUUGCCUCGAGGGCAUCGAGCCCAAUAGGAGCAAGAUUGGUAGCAUCGUCAAGGAGU (((..(((..((((((((((((((....((((.(((((((.(((.(((....))))))....))))))).))))..)))))))((....)).))))))))))..)))............ ( -40.50) >DroPse_CAF1 96044 119 - 1 UGCCUCAAAUGUGCUUCGCUCGAUAACACUUUUGGGAGACGGAAUUAAGUCUUUUUGCAAAAACUGCCUCAGCAACAUCGAACCAAACACAGACAAGAUAAAUACUAUCAUGAGUCAGU ((.((((..((((.((.(.(((((.....(((((((((((........))))))...)))))..(((....)))..))))).).)).)))).....((((.....)))).)))).)).. ( -22.90) >DroSec_CAF1 103868 119 - 1 UGCCUCCAAUGUUCUGCGCUCGAUUACACUUUUGGGCGAUGGCAUGAAGUCCUUCUGCACCAACUGCCUCGAGGGCAUCGAGCCCAACAGGAGCAAGAUUGGUAGCAUCCUCAAGGAGU (((..((((((((((.(((((((........)))))))..(((.(((.((((((..(((.....)))...)))))).))).))).....))))))...))))..)))(((....))).. ( -41.70) >DroEre_CAF1 105003 119 - 1 AGCCUCCAAUGUUCUGCGCUCGAUUAACCUCUUGGGCGAUGGCAUGAAGUCCUUCUGCGUCAACUGCCUCGAGGGCAUCGAGCCCAACAGGAGCAAGAUUAAGAGCAUCCUCAGGGAGU ...((((..((((((..(((((((...((((..(((((.((((..(((....)))...))))..))))).))))..)))))))......)))))).......(((....)))..)))). ( -40.30) >DroYak_CAF1 105283 119 - 1 UGCCUCCAAUGUGCUGCGCUCGGUCACCCUGUUGGGCGAUGGCAUGAAGUCCUUCUGCGCCAACUGCCUCGAGGGCAUCGAGCCGAACAGGAGCAAGAUCAAGAGCAUCCUCAAGGAGU ...((((..((.(.(((.((.((((.(((((((.(((..((((..(((....)))...))))..((((.....))))....))).)))))).)...)))).)).))).)..)).)))). ( -41.50) >DroAna_CAF1 114666 119 - 1 CGUCUCGAAUGUCCUGCGUUCGAUCACCCUUCUGGGCGAUGGCAUCAAUUCCUUCUGCGUGAACUGCCUGAAGGGUGCCGAACCGAACAAGGACAGAAUUGCCUCCAACAUGAUGGAGU .........((((((..((((((((.(((....))).)))(((((.....(((((.(((....).))..))))))))))....))))).)))))).......(((((......))))). ( -43.80) >consensus UGCCUCCAAUGUUCUGCGCUCGAUUACACUUUUGGGCGAUGGCAUGAAGUCCUUCUGCACCAACUGCCUCGAGGGCAUCGAGCCCAACAGGAGCAAGAUUAAUAGCAUCCUCAAGGAGU ...((((..((((((.(((((((........)))))))..(((.(((.((((((..(((.....)))...)))))).))).))).....)))))).(((.......))).....)))). (-24.79 = -25.97 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:39 2006