Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,186,576 – 10,186,696 |
Length | 120 |
Max. P | 0.548138 |
Location | 10,186,576 – 10,186,696 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.78 |
Mean single sequence MFE | -36.95 |
Consensus MFE | -30.61 |
Energy contribution | -31.53 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.12 |
Mean z-score | -1.78 |
Structure conservation index | 0.83 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10186576 120 - 22407834 CGCAUGUACGCCGCCAUUUCGUGUGUUUGUAUAAUAAUGGCACUGGUAUCAACACCGGCCGGACAAUAUGCCGGCUGUAAUGCCCGUCGUAAUUUGCACGAUAAGCUGCUGCAAACGAUU ((..((((.((.((....(((((((....((..((...((((..(((......)))((((((.(.....)))))))....)))).))..))...)))))))...)).))))))..))... ( -35.00) >DroVir_CAF1 175689 120 - 1 CGCAUGUAUGCAACAAUUUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCCGGCUGUAAUGCACGCCGUAAUUUGCACGAUAAACUGUUGCAAACGAUU ....(((.(((((((...((((((((.((((((((...((((.((....)).....((((........)))))))))))))))).))........)))))).....))))))).)))... ( -40.00) >DroGri_CAF1 151690 120 - 1 CGGAUGUAUGCAACAAUAUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCCGGCUGUAAUGCGCGCCGUAAUUUGCACGAUAAACUGUUGCAAACGAUU ....(((.(((((((.((((((((((.((((((((...((((.((....)).....((((........)))))))))))))))).))........))))))))...))))))).)))... ( -41.60) >DroWil_CAF1 181710 120 - 1 CGCAUGUAUGCAACAAUUUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCUGGCUGUAAUGCUCGUCGUAAUUUGCACGAUAAACUUUUGCAAACGAUU ....(((.(((((.....(((((((.((((.......(((((.((.......))..))))).......(((.(((......))).)))))))..))))))).......))))).)))... ( -30.50) >DroMoj_CAF1 217240 120 - 1 CGCAUGUAUGCAACAAUUUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCCGGCUGCAAAGCCAGCCGUAAUUUGCACGAUAAACUGUUGCUAACGAUU ....(((..((((((...(((((((.((((.......(((((.((.......))..))))).......(((.((((....)))).)))))))..))))))).....))))))..)))... ( -38.50) >DroPer_CAF1 84203 120 - 1 UGCAUGUAUGCCGCAAUUUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCCGGCUGUAAUGCCCGUCGUAAUUUGCACGAUAAGCUGCUGCAAUCGAUU ....((((.((.((....(((((((.....((((..((((.((((....).(((((((((........)))))).))).))).))))..)))).)))))))...)).))))))....... ( -36.10) >consensus CGCAUGUAUGCAACAAUUUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCCGGCUGUAAUGCCCGCCGUAAUUUGCACGAUAAACUGUUGCAAACGAUU ....(((.(((((((...(((((((.((((.......(((((.((.......))..))))).......(((.(((......))).)))))))..))))))).....))))))).)))... (-30.61 = -31.53 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:38 2006