Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,155,936 – 10,156,029 |
Length | 93 |
Max. P | 0.979487 |
Location | 10,155,936 – 10,156,029 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 77.20 |
Mean single sequence MFE | -22.44 |
Consensus MFE | -11.26 |
Energy contribution | -12.38 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.29 |
Mean z-score | -2.44 |
Structure conservation index | 0.50 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10155936 93 + 22407834 GCGCUUAUUGUUUUCCUUGUGACCUAUUAGAGUCUUUAGUUCUAUUUAAGGACCUUUUACAAGGAUUGCUUAUGAAACU---AACU-ACAGUGCUAU ((((((((.((..(((((((((......((.((((((((......)))))))))).)))))))))..))..))).....---....-..)))))... ( -23.70) >DroSec_CAF1 76980 82 + 1 GCGCUUAUUGUUUUCCCUGUGACCUAUUCGAGUCUUUAGUUAUACUUAACGACCUUUCACAAGGAUUGCUUUUGA---------------GUGCUAU (((((((..((..(((.(((((.((.....))......((((....))))......))))).)))..))...)))---------------))))... ( -21.80) >DroSim_CAF1 80769 82 + 1 GCUCUUAUUGUUUUCCCUGUGACCUAUUAGAGUCUUUAGUUAUAUUUAAGGACCUUUCACAAGGAUUGCUUAUGA---------------GUGCUAU ((.(((((.((..(((.(((((......((.((((((((......)))))))))).))))).)))..))..))))---------------).))... ( -25.50) >DroEre_CAF1 78318 96 + 1 GGCCUUAUUGUUUCCCUUGUGACCUAUUAGAGUCUUUAGGUUUAUUUGCG-GCCCCUUAGAAGGAUUGCUUAUGAAACUGGAAACUGGCAAAGCAAC .(((.....((((((((((.((((.....).)))..))))(((((..(((-(..(((....))).))))..)))))...)))))).)))........ ( -21.90) >DroYak_CAF1 78375 86 + 1 GGUCUUAUUGUUUUCCUUGUGACCUAUUAGAGUCUUUAGGUAUAGUCAGGGAUCCUUUAGAAGGAUUGCUUAUGAAA-----------CAAAGCAAU .............((((((..(((((..........))))).....))))))((((.....))))((((((......-----------..)))))). ( -19.30) >consensus GCGCUUAUUGUUUUCCUUGUGACCUAUUAGAGUCUUUAGUUAUAUUUAAGGACCUUUUACAAGGAUUGCUUAUGAAA___________CAGUGCUAU .........((..(((((((((......((.((((((((......)))))))).)))))))))))..))............................ (-11.26 = -12.38 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:34 2006