| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,153,170 – 10,153,283 |
| Length | 113 |
| Max. P | 0.935043 |
| Location | 10,153,170 – 10,153,283 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 76.12 |
| Mean single sequence MFE | -31.27 |
| Consensus MFE | -17.80 |
| Energy contribution | -18.63 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.935043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10153170 113 + 22407834 ACCGGCCACUGUGUUCGGCGAGCUGGCCAUUCUCUACAAUGCUCCACGCCAGGCGUCCAUAGAGGGUAAGUUCUCAAGUUUGGAAAAACCAAAACCAAGAGCAACAAAAAAAA .((((((.(((....))).).)))))..((((((((..(((((........)))))...))))))))..(((((....(((((.....)))))....)))))........... ( -31.00) >DroSec_CAF1 74231 96 + 1 ACCGGCCACCGUGUUCGGUGAGCUGGCCAUUCUCUACAAUGCUCCGCGUCAGGCGUCCGUAGAGGGUAAGUUCUCAAGUUUGGAAAA-----------------CAAAAAAAA .((((((((((....))))).)))))..(((((((((.(((((........)))))..)))))))))..(((.((.......)).))-----------------)........ ( -32.10) >DroSim_CAF1 78080 95 + 1 ACCGGCCACCGUGUUCGGUGAGCUGGCCAUUCUCUACAAUGCUCCACGCCAGGCGUCCGUAGAGGGUAAGUUCUGAAGUUUGGAAAA------------------ACCAAAAA .((((((((((....))))).)))))..(((((((((.(((((........)))))..)))))))))...........(((((....------------------.))))).. ( -34.10) >DroEre_CAF1 75441 104 + 1 ACCAGCCACCGUGUUCGGUGAACUGGCCAUCCUCUACAAUGCUCCGCGCCAGGCGUCCGUAGAGGGUGAGUUCUCUAGUUUGGAAAAACUUU------GG---AAAACAAAAA .((((.(((((....)))))..)))).((((((((((.(((((........)))))..))))))))))..((((..(((((....)))))..------))---))........ ( -39.90) >DroWil_CAF1 110942 97 + 1 ACCAGCCACCGUCUUCGGUGAAUUAGCCAUACUCUACAAUGCGCCCAGACAGGCCACCAUCAAGGGUGAGCGA-GAAGUUUUGUCAAUUCAAA------------ACCAA--- ......(((((....)))))...........(((........(((......)))((((......))))...))-)..((((((......))))------------))...--- ( -22.80) >DroYak_CAF1 75633 99 + 1 ACCGGCCACCGUCUUCGGUGAACUGGCCAUCCUCUACAAUGCUCCGCGCCAGGCGUCCAUAGAGGGUAAGUUUCCAACUUUGGCAUAACUCC--------------ACACAAA ..(((.(((((....)))))..)))(((((((((((..(((((........)))))...))))))))((((.....)))).)))........--------------....... ( -27.70) >consensus ACCGGCCACCGUGUUCGGUGAACUGGCCAUUCUCUACAAUGCUCCGCGCCAGGCGUCCAUAGAGGGUAAGUUCUCAAGUUUGGAAAAAC________________AACAAAAA .((((.(((((....)))))((((.(((...(((((..(((((........)))))...)))))))).)))).......)))).............................. (-17.80 = -18.63 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:34 2006