Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,152,034 – 10,152,142 |
Length | 108 |
Max. P | 0.506864 |
Location | 10,152,034 – 10,152,142 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.15 |
Mean single sequence MFE | -25.62 |
Consensus MFE | -14.34 |
Energy contribution | -15.40 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.11 |
Mean z-score | -2.12 |
Structure conservation index | 0.56 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506864 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10152034 108 + 22407834 AAGGUGAAAAAUUCCCAGUUACCUUCAAUUGUAGCUAGUUAUGCAAACUG--AAAAUCAGUAAUUGCGUUUGGCA---------UUCAAAUGCCCAGAAACUUGCAUUCACCGACAUUC ..((((((.......(((((......)))))..((.((((((((((((((--.....))))..))))))..((((---------(....)))))....)))).)).))))))....... ( -28.40) >DroSec_CAF1 73052 119 + 1 AAAGUGAAAACUUCCCAGUUACCUUCAAUUGUAGCUAGUUAUGCAAACUGGGAAAACCAAUAACUGCGUUUGGCAUUGAGUACAUUCAAAUGCCCAGAAACUUGCAGUCACUGACAUCC ..(((((....(((((((((.........((((........))))))))))))).........(((((((((((((((((....))).))))))...))))..)))))))))....... ( -31.10) >DroSim_CAF1 76900 119 + 1 AAAGUUAAAACCUCCGAGUUACCUUCAAUUGUAGCUAGUUAUGCAAACUGGGAAAACCAAUAACUGCGUUUGGCAUCGAGUACAUUCAAAUGCCCAGAAACUUGCAUUCACUGACAUCC ...(((..........((((((........))))))(((.((((((.(((((....((((.........))))....(((....))).....)))))....))))))..)))))).... ( -21.90) >DroEre_CAF1 74334 116 + 1 AAAGUAAUAACUUAUCAGUUGCAUUCAAUUGCACCUAGUUAUGCAAUCUG--AAAACAAGUAACUGGGCUUGACAUCGAGUACCUUCAAAUACCCAGA-ACUUCCAUUCACUGACAUCC .((((....)))).(((((....((((((((((........)))))).))--))...((((..(((((((((....))))............))))).-))))......)))))..... ( -21.10) >consensus AAAGUGAAAACUUCCCAGUUACCUUCAAUUGUAGCUAGUUAUGCAAACUG__AAAACCAAUAACUGCGUUUGGCAUCGAGUACAUUCAAAUGCCCAGAAACUUGCAUUCACUGACAUCC ..(((((.........((((((........)))))).....(((((.((((..............((((((((............))))))))))))....))))).)))))....... (-14.34 = -15.40 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:33 2006