Locus 3480

Sequence ID 2L_DroMel_CAF1
Location 10,147,622 – 10,147,730
Length 108
Max. P 0.727760
window5503

overview

Window 3

Location 10,147,622 – 10,147,730
Length 108
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 79.90
Mean single sequence MFE -22.07
Consensus MFE -14.49
Energy contribution -16.05
Covariance contribution 1.56
Combinations/Pair 1.19
Mean z-score -1.61
Structure conservation index 0.66
SVM decision value 0.42
SVM RNA-class probability 0.727760
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10147622 108 - 22407834
CUAGGUUUCGCUCCAA-ACACAUUUCAUCGUGAUUCAAUACCCUGUUUAUUCAGGGAGCACAAGGUCAUUUCCGAUCAUAAAAGUACACAUGAAAUCAUCAGAUAAUAA-
...(((((((((((..-.(((........)))..........(((......))))))))....((((......))))..............))))))............- ( -23.40)
>DroSec_CAF1 68669 104 - 1
CUAGGUUUCGCUCCAA-ACACAUUUCAUCGUGA-----UACCCUGUUUAUUCAGGGAGCGCAAGUUCAUUUCCGAUCAUAAAAGUACACAUGAAAUCAUCAGAUAAUGAA
...((.......))..-....(((((((.(((.-----(((((((......))))((((....))))................)))))))))))))..(((.....))). ( -22.70)
>DroSim_CAF1 72163 109 - 1
CUAGGUUUCGCUCCAA-ACACAUUUCAUCGUGAUUCAAUACCCUGUUUAUUCAGGGAGCGCAAGGUCAUUUCCGAUCAUAAAAGUGCAAAUGAAAUCAUCAGAUAAUGAA
...(((((((((((..-.(((........)))..........(((......))))))))(((.((((......)))).......)))....)))))).(((.....))). ( -24.70)
>DroEre_CAF1 67084 110 - 1
CUAGGUUUCGCCCCAACACACAUUUUAGCGUGAUUCAAUACCCUGUUUAUUCGGGGGGCACAAGGUCAUUUCCGAUCACAAAAGUACACAUGAAAUAAUCAGAUAAUGAA
....((((((((((..(((.(......).)))..........(((......))))))))....((((......))))..............)))))..(((.....))). ( -23.20)
>DroYak_CAF1 70175 107 - 1
CUAGGUUUCGCUCCAA-ACACAUUUCAGCGUGAUUCAAUACCCUGUUUAUUCAGGGAGCACAAGGUCAUUUCCGAUCAUAAAACUACACAUGAAAUCAUCUGAUAAUG--
...(((((((((((..-.(((........)))..........(((......))))))))....((((......))))..............))))))...........-- ( -23.40)
>DroAna_CAF1 72905 82 - 1
CAAGGUUUUGCUCAAA-ACGGAUUUUAGCGUGAUUCAAUACCCUAU--AUUUAGAGUG----------UUAUGGAUCAUAA--------------UCAUUCGAGAAUUG-
...(((((((((.(((-.....))).)))((((((((((((.(((.--...))).)))----------)..))))))))..--------------.......)))))).- ( -15.00)
>consensus
CUAGGUUUCGCUCCAA_ACACAUUUCAGCGUGAUUCAAUACCCUGUUUAUUCAGGGAGCACAAGGUCAUUUCCGAUCAUAAAAGUACACAUGAAAUCAUCAGAUAAUGA_
...(((((((((((....(((........)))..........(((......))))))))....((((......))))..............))))))............. (-14.49 = -16.05 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:31 2006