Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,071,177 – 1,071,278 |
Length | 101 |
Max. P | 0.773229 |
Location | 1,071,177 – 1,071,278 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 90.77 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -18.42 |
Energy contribution | -18.50 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.05 |
Mean z-score | -1.55 |
Structure conservation index | 0.82 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773229 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1071177 101 - 22407834 GGAUACCGGGCGAAAUAAAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGGAACAGUGGCGUAGGCGGUGGGGUAA------GAUCAGGGGUA-AGAUAA ...((((.............((....)).((((((..(((.............((((....)))).((....)).)))..).))------)))....))))-...... ( -20.30) >DroSec_CAF1 53458 102 - 1 GGAUACCGGGCGAAAUAAAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGCAACAGUGGCGUAGGCGGUGGGGUAA------GAUCAGGGGUAAAGAUAA ...((((.............((....)).((((((..(((.............((((....)))).((....)).)))..).))------)))....))))....... ( -21.30) >DroSim_CAF1 45297 102 - 1 GGAUACCGGGCGAAAUACAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGGAACAGUGGCGUAGGCGGUGGGGUAA------AAUCAGGGGUAAAGAUAA .....((.(.((...(((.(((.((((....))))..................((((....))))))))))..)).).))....------.................. ( -21.00) >DroEre_CAF1 50630 100 - 1 GGAUAGCAGGCGAAAUAAAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGAAACAGUGGCGUAGGCAGUGGGC-AU------UUUCAGGGGUA-AAAUAA .....((.(((........))).((((....)))).))((..(((((((....((((....)))).((.((.....)).))-))------)))).)..)).-...... ( -22.40) >DroYak_CAF1 53469 106 - 1 GGAUACCAGGCGAAAUAAAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGAACCAGUGGCGUAGGCAGUGGGG-AUUGGGGAUUUCAGGGGUA-AGAUAA ...((((.(((........)))....(((((((((((..(.((..........((((....)))).((....)).))..).-.)))))))))))...))))-...... ( -27.40) >consensus GGAUACCGGGCGAAAUAAAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGAAACAGUGGCGUAGGCGGUGGGGUAA______GAUCAGGGGUA_AGAUAA ...((((.(((........))).((((....))))..(((.............((((....)))).((....)).))).))))......................... (-18.42 = -18.50 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:38 2006